Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_K16
(575 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 42 5e-04
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 42 5e-04
11_04_0216 - 14954047-14956098 33 0.22
04_03_0922 + 20834195-20836603 31 0.87
08_01_0663 + 5721902-5723176,5724162-5724233,5724405-5724560,572... 29 2.0
04_03_0916 + 20794240-20794246,20794585-20796545 29 2.0
01_06_0115 + 26585481-26586401,26586501-26586556,26586747-265868... 29 2.0
05_03_0212 + 10260690-10261272,10261921-10262435,10262446-102625... 29 2.7
04_03_0913 + 20777859-20780309 28 6.1
04_03_0397 - 15362353-15363383,15385301-15385910,15386890-153870... 28 6.1
12_02_0244 - 16241243-16241279,16241781-16241848,16241930-162420... 27 8.1
11_04_0041 - 12690287-12690816,12691087-12691378 27 8.1
09_03_0172 - 13072575-13073800,13075919-13076054 27 8.1
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 41.5 bits (93), Expect = 5e-04
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = +1
Query: 505 AHRKFSAPRHGSMGFYPKKRSRR 573
+HRKF PRHGS+GF P+KRS R
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRSSR 24
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 41.5 bits (93), Expect = 5e-04
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = +1
Query: 505 AHRKFSAPRHGSMGFYPKKRSRR 573
+HRKF PRHGS+GF P+KRS R
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRSSR 24
>11_04_0216 - 14954047-14956098
Length = 683
Score = 32.7 bits (71), Expect = 0.22
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = -2
Query: 349 FGKRETSAGFPRGLNERRIELLPTGVEVQRCGRSLEEIQFSPQRVV 212
FG GF G+ E+R+E P VE+++C + + +R++
Sbjct: 249 FGSSSDGDGFSDGVEEKRLECDPVSVEIKKCEPPAKSLSSVSRRIL 294
>04_03_0922 + 20834195-20836603
Length = 802
Score = 30.7 bits (66), Expect = 0.87
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +1
Query: 52 QPRFQCQSIRH*KPAKYSSSSELQHCRCRSGLHVQG-QDWCICDR 183
QP+ QC P + +EL C+C G ++ +DW + DR
Sbjct: 290 QPKVQCDVFAVCGPFTICNDNELGFCKCMKGFSIKSPKDWELDDR 334
>08_01_0663 +
5721902-5723176,5724162-5724233,5724405-5724560,
5724655-5724844,5725173-5725255
Length = 591
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -2
Query: 157 LEHVVHSGTDSVEVRNLRNIWQVFSGECFGTEIVVVVME 41
LE + HSG + +V L N W ++ F + VV+V E
Sbjct: 417 LELLAHSGEVNKQVPRLSNFWNMYFTHHFQVDTVVMVRE 455
>04_03_0916 + 20794240-20794246,20794585-20796545
Length = 655
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +1
Query: 52 QPRFQCQSIRH*KPAKYSSSSELQHCRCRSGLHVQG-QDWCICDR 183
QP+ QC P + +EL +C C G + +DW + DR
Sbjct: 135 QPKAQCDVYSICGPFTVCTDNELPNCNCIKGFTITSLEDWVLEDR 179
>01_06_0115 +
26585481-26586401,26586501-26586556,26586747-26586876,
26587396-26587506,26587606-26587674,26588125-26588198,
26588446-26588581,26588702-26588795,26588901-26589000,
26589100-26589224,26589597-26589634,26589662-26589742,
26589868-26589972,26590102-26590166,26590371-26590572,
26591073-26591159,26591238-26591294,26591369-26591458,
26591572-26591658,26592204-26592278,26592363-26592463,
26592565-26592655
Length = 964
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Frame = +2
Query: 470 CNYKLKKQKKNSRTGSFRHLVMG----RWDSTPRRDP 568
C + +KK+ K SR G+ H V G RWD +P
Sbjct: 760 CRFYVKKELKRSREGAIAHRVRGSCQHRWDEIDSLNP 796
>05_03_0212 +
10260690-10261272,10261921-10262435,10262446-10262569,
10262840-10263042,10263169-10263240,10264905-10265007,
10265350-10265582
Length = 610
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = -2
Query: 430 KKNDFLKTMVLNNFFKF*INDCFKLEIFGKRETSAGFPRGLNERRIELLPTGVEVQRCGR 251
K+ F+ + V + + D FK + G PRG ++++ L + + CG
Sbjct: 425 KRTPFVDSQVRRSGRLLALRDGFKNILQEDPNMGVGKPRGKAVKKLKQLAEKIGSEMCGT 484
Query: 250 SLEEI 236
SLEE+
Sbjct: 485 SLEEV 489
>04_03_0913 + 20777859-20780309
Length = 816
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = +1
Query: 52 QPRFQCQSIRH*KPAKYSSSSELQHCRCRSGLHVQG-QDWCICDR 183
QP+ C P +EL HC C G V +DW + DR
Sbjct: 288 QPKAPCDVYAICGPFTVCIDNELPHCNCIKGFTVTSLEDWELEDR 332
>04_03_0397 -
15362353-15363383,15385301-15385910,15386890-15387096,
15388287-15388313,15388397-15388471
Length = 649
Score = 27.9 bits (59), Expect = 6.1
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 467 NCNYKLKKQKKNSRTGSFRHLVMGRWDST 553
+CNY+L+K+K+ S + + +G W T
Sbjct: 16 HCNYELQKEKEESERKLRKRVKIGPWGGT 44
>12_02_0244 -
16241243-16241279,16241781-16241848,16241930-16242032,
16242095-16242256,16242305-16242369,16242547-16242612,
16242738-16242829,16243029-16243134,16243231-16243279,
16243387-16243540,16243661-16243687,16243797-16243959,
16244621-16244701
Length = 390
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = -2
Query: 175 RCTNLVLEHVVHSGTDSVEVRN--LRNIWQVFSGECF 71
R NLV+++V HSG + +++ LRN+ FS CF
Sbjct: 354 RLQNLVMQNVDHSGGEFIDLLQGLLRNMLFGFSRICF 390
>11_04_0041 - 12690287-12690816,12691087-12691378
Length = 273
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +3
Query: 243 SRLRPHRWTSTPVGRSSIRLSLSPRGNPALVSRFPNIS 356
SRLRP+R S P RS + +S R P+ P S
Sbjct: 138 SRLRPNRCLSEPFRRSGTLVFMSGREEPSFAEPEPEPS 175
>09_03_0172 - 13072575-13073800,13075919-13076054
Length = 453
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 223 QRVVITIKDIGVSGGRRCTNLVLEHVV 143
+ V++T+KD+ GGR CT L E +
Sbjct: 281 RNVILTMKDLTAVGGRFCTYLSKEKAI 307
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,542,382
Number of Sequences: 37544
Number of extensions: 311697
Number of successful extensions: 850
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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