Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_K16
         (575 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)                43   2e-04
SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)          43   2e-04
SB_43991| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  

>SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)
          Length = 338

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 16/23 (69%), Positives = 20/23 (86%)
 Frame = +1

Query: 505 AHRKFSAPRHGSMGFYPKKRSRR 573
           +HRKF APRHGS+GF P+KR +R
Sbjct: 1   SHRKFEAPRHGSLGFLPRKRCKR 23


>SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)
          Length = 347

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 16/23 (69%), Positives = 20/23 (86%)
 Frame = +1

Query: 505 AHRKFSAPRHGSMGFYPKKRSRR 573
           +HRKF APRHGS+GF P+KR +R
Sbjct: 49  SHRKFEAPRHGSLGFLPRKRCKR 71


>SB_43991| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1149

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 21/64 (32%), Positives = 31/64 (48%)
 Frame = +3

Query: 114  RTSTLSVPEWTTCSRTRLVHLRPPLTPMSLIVMTTLWGEN*ISSRLRPHRWTSTPVGRSS 293
            ++  +S P W   +RT L+H       + L  +  L+G+   SS L  HRW S  VG S 
Sbjct: 1083 QSKLMSTPHWNQSARTSLLH------SVCLRYIEVLFGK---SSSL--HRWGSPKVGESP 1131

Query: 294  IRLS 305
             R +
Sbjct: 1132 TRFA 1135


>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3592

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 20/59 (33%), Positives = 25/59 (42%)
 Frame = -2

Query: 343 KRETSAGFPRGLNERRIELLPTGVEVQRCGRSLEEIQFSPQRVVITIKDIGVSGGRRCT 167
           K E  A  P  L  R    L   + +  CG   + IQ S  R V T+    VS G +CT
Sbjct: 304 KTEIQASHPTALIRRSCICLMRALALT-CGLHADSIQTSQVRTVSTLLHKLVSAGTKCT 361


>SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1506

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = +2

Query: 2   FGDKMTAAGKVNLFH---NDNHDFSAKAFATKNLPNIPQVPNFNTV 130
           FGDK   A  +  FH   ND  D S  +  T+ + ++  +P + TV
Sbjct: 587 FGDKWIGANTIRAFHHTDNDGIDASENSNLTRIIFDLSTLPMYETV 632


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,601,045
Number of Sequences: 59808
Number of extensions: 344368
Number of successful extensions: 910
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)