Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_K16
         (575 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identi...    41   7e-04
At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identi...    41   7e-04
At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identi...    40   9e-04
At2g19130.1 68415.m02233 S-locus lectin protein kinase family pr...    29   2.9  
At4g14330.1 68417.m02207 phragmoplast-associated kinesin-related...    28   5.1  
At2g44020.1 68415.m05473 mitochondrial transcription termination...    28   5.1  

>At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score = 40.7 bits (91), Expect = 7e-04
 Identities = 15/23 (65%), Positives = 19/23 (82%)
 Frame = +1

Query: 505 AHRKFSAPRHGSMGFYPKKRSRR 573
           +HRKF  PRHGS+GF P+KR+ R
Sbjct: 2   SHRKFEHPRHGSLGFLPRKRANR 24


>At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score = 40.7 bits (91), Expect = 7e-04
 Identities = 15/23 (65%), Positives = 19/23 (82%)
 Frame = +1

Query: 505 AHRKFSAPRHGSMGFYPKKRSRR 573
           +HRKF  PRHGS+GF P+KR+ R
Sbjct: 2   SHRKFEHPRHGSLGFLPRKRANR 24


>At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identical
           to ribosomal protein GI:806279 from [Arabidopsis
           thaliana]
          Length = 390

 Score = 40.3 bits (90), Expect = 9e-04
 Identities = 15/23 (65%), Positives = 19/23 (82%)
 Frame = +1

Query: 505 AHRKFSAPRHGSMGFYPKKRSRR 573
           +HRKF  PRHGS+GF P+KR+ R
Sbjct: 2   SHRKFEHPRHGSLGFLPRKRASR 24


>At2g19130.1 68415.m02233 S-locus lectin protein kinase family
           protein contains Pfam domains PF00954: S-locus
           glycoprotein family, PF00069: Protein kinase domain and
           PF01453: Lectin (probable mannose binding)
          Length = 828

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
 Frame = +1

Query: 52  QPRFQCQSIRH*KPAKYSSSSELQHCRCRSGLHVQGQ-DWCICD 180
           QPR QCQ  R+       S      CRC  G     Q DW + D
Sbjct: 285 QPRQQCQVYRYCGSFGICSDKSEPFCRCPQGFRPMSQKDWDLKD 328


>At4g14330.1 68417.m02207 phragmoplast-associated kinesin-related
           protein 2 (PAKRP2) identical to cDNA
           phragmoplast-associated kinesin-related protein 2
           (PAKRP2) GI:16973450
          Length = 869

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = -2

Query: 361 KLEIFGKRETSAGFPRGLNERRIELLPTGVEVQRCGRSLEEIQFSPQRVVITIKDIGVSG 182
           +LE+ GK+  +A F  G    +I      VE +R  +S    + S +   I I D+   G
Sbjct: 205 RLEVMGKKAKNASFISGTEAGKISKEIVKVEKRRIVKSTLCNERSSRSHCIIILDVPTVG 264

Query: 181 GR 176
           GR
Sbjct: 265 GR 266


>At2g44020.1 68415.m05473 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 507

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 291 SIRLSLSPRGNPALVSRFPNISNLKQSLI 377
           S++L + P G   +V + P I +LKQ++I
Sbjct: 332 SLKLKIDPEGFARVVEKMPQIVSLKQNVI 360


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,609,342
Number of Sequences: 28952
Number of extensions: 252804
Number of successful extensions: 614
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)