Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_K15
(482 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 30 0.21
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr... 27 1.5
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 26 2.6
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch... 25 4.5
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 4.5
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 4.5
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||... 25 6.0
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p... 25 6.0
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 25 6.0
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 21 7.0
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 29.9 bits (64), Expect = 0.21
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = -3
Query: 348 PEPKQCA-CRLRHYVPERC-EDRQPAQRDCRQCHRGVH 241
P K+C C L ++ RC E R+ R CR CH H
Sbjct: 122 PWTKKCMNCGLLGHIAARCSEPRKRGPRVCRTCHTDTH 159
>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 172
Score = 27.1 bits (57), Expect = 1.5
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -1
Query: 134 RTDATPSPTSSAVATNSATMGRHHSHVQAPPPPPA 30
R A P P +A A +++T APPP P+
Sbjct: 4 RRSAAPPPRRAAPARSASTAAALPPRTMAPPPAPS 38
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 26.2 bits (55), Expect = 2.6
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -1
Query: 107 SSAVATNSATMGRHHSHVQAPPPPPATL 24
SS+ +S T H SH PPPPP L
Sbjct: 29 SSSFHESSLTSSTH-SHPSNPPPPPTRL 55
>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 463
Score = 25.4 bits (53), Expect = 4.5
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 119 PSPTSSAVATNSATMGRHHSHVQAPPP 39
P P SS+ NS T H+S PPP
Sbjct: 167 PQPISSSSTYNSTTSSYHNS-TSTPPP 192
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.4 bits (53), Expect = 4.5
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -1
Query: 116 SPTSSAVATNSATMGRHHSHVQAPPPPP 33
SP A + A M R S PPPPP
Sbjct: 885 SPFPGASSAQPAAMSRTSSVSTLPPPPP 912
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.4 bits (53), Expect = 4.5
Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 1/72 (1%)
Frame = -1
Query: 233 PETGPNTIAFPITTNPKXXXXXXXXXXXXXCTGRTDATP-SPTSSAVATNSATMGRHHSH 57
P T ++ + PI T T +T PT ++ + T+ +
Sbjct: 252 PPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTS 311
Query: 56 VQAPPPPPATLS 21
+ PPPPA+ S
Sbjct: 312 STSTPPPPASTS 323
>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1116
Score = 25.0 bits (52), Expect = 6.0
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -1
Query: 116 SPTSSAVATNSATMGRHHSHVQAPPPPPATLSCL 15
+P S + T+++ + R+ + PPPPP S L
Sbjct: 520 APQSPSSNTSASVLTRNFVAHRDPPPPPTETSSL 553
>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 25.0 bits (52), Expect = 6.0
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -1
Query: 131 TDATPSPTSSAVATNSATMGRHHSHVQAPP 42
T AT + T + S+T G+H+ +PP
Sbjct: 256 TTATSTLTDAGFGDKSSTAGKHNVETTSPP 285
>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 609
Score = 25.0 bits (52), Expect = 6.0
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -3
Query: 480 DPAAGEHQHPGERGLDSGRSNRRDARPRHRTPGEGGGRYRSQQ 352
+P+A H P +G + S+ H T +G G+YRS Q
Sbjct: 262 EPSA--HSRPSPQGT-TANSSSASISSLHNTTPDGEGKYRSVQ 301
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 21.4 bits (43), Expect(2) = 7.0
Identities = 9/30 (30%), Positives = 15/30 (50%)
Frame = -1
Query: 119 PSPTSSAVATNSATMGRHHSHVQAPPPPPA 30
PS + A + ++ ++ PPPPPA
Sbjct: 169 PSFQPPSAAAPATSLPSDYNPPPPPPPPPA 198
Score = 21.4 bits (43), Expect(2) = 7.0
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -1
Query: 47 PPPPPATL 24
PPPPP TL
Sbjct: 239 PPPPPPTL 246
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,300,413
Number of Sequences: 5004
Number of extensions: 20573
Number of successful extensions: 93
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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