Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_K15
         (482 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   1.7  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   1.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   4.0  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    21   9.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   9.1  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 104  SAVATNSATMGRHHSHVQAPPPPP 33
            S++ ++ +T+ R     Q PPPPP
Sbjct: 1336 SSIDSDYSTLERTAWRQQQPPPPP 1359


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 80  TMGRHHSHVQAPP 42
           TMG  HSH+ A P
Sbjct: 418 TMGHGHSHIHATP 430


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 135 QNGRHPESHQQRRSH 91
           QN  H  SHQ  R+H
Sbjct: 118 QNNNHYTSHQHLRTH 132


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = -3

Query: 393 RTPGEGGGRYRSQQRPEPKQCACRLRHYVPERCEDRQPAQRDCRQCHR 250
           R+ G G G    ++RP       +L     E  E+R   +R  +Q  R
Sbjct: 8   RSDGRGNGGTPEEKRPRTAFSGEQLARLKREFAENRYLTERRRQQLSR 55


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 50  APPPPPATLS 21
           APPPPP + S
Sbjct: 342 APPPPPPSSS 351


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,332
Number of Sequences: 438
Number of extensions: 1988
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)