Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_K13
         (423 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0395 + 3118480-3119097,3119699-3119989,3120063-3120114,312...    29   2.0  
11_04_0047 + 12787845-12788004,12788297-12788940                       27   6.2  
06_01_1116 + 9197761-9199956                                           27   8.2  

>05_01_0395 +
           3118480-3119097,3119699-3119989,3120063-3120114,
           3120395-3120546
          Length = 370

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -3

Query: 205 HCSDGWTSTYDCVSHSLANFLQFLEGIPRRRRNGPHSEDASDNQQNNFSEI 53
           HCS G  ++   V+ +   FLQ L+  PRR +  PH    SD  + + S +
Sbjct: 194 HCSSGCINSL--VAEARIKFLQLLDHPPRRDQPPPHLCLGSDRARTHPSSL 242


>11_04_0047 + 12787845-12788004,12788297-12788940
          Length = 267

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 280 LYKHEKIHKKVNE*LFSFSQSRGLGHCSDGWTSTYDC 170
           L K+EK  K+++  L S   +  LG  S+  T+T DC
Sbjct: 211 LAKYEKEKKQMSNSLPSDGDNTNLGASSESMTATVDC 247


>06_01_1116 + 9197761-9199956
          Length = 731

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +1

Query: 148 SWP-ENERRSHKCWSSRRYSGPGHGFG*RKIII 243
           SWP ENER   KC     +S   H +   +III
Sbjct: 621 SWPMENERNKEKCNQEFHFSIEEHFYSSHQIII 653


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,217,319
Number of Sequences: 37544
Number of extensions: 170257
Number of successful extensions: 411
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)