Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_K12
(400 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1482 - 26864793-26865043,26865325-26865454,26865564-268657... 29 1.8
03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,662... 29 1.8
05_01_0421 + 3308692-3309070,3309199-3309339,3309776-3309897,331... 28 2.4
03_02_0039 - 5213699-5214775,5214815-5215093,5215300-5215776,521... 28 3.1
12_02_0298 + 17041206-17041712 27 5.5
08_02_1557 + 27867977-27869134 27 5.5
01_03_0148 - 13153782-13154870,13155823-13156672,13156698-13157008 27 5.5
01_01_0753 - 5814087-5814344,5814461-5814646,5814847-5815004,581... 27 7.2
04_01_0326 + 4321219-4321391,4321497-4321577,4321787-4321842,432... 26 9.5
01_06_1593 + 38502884-38502993,38503580-38503665,38504352-385044... 26 9.5
>07_03_1482 -
26864793-26865043,26865325-26865454,26865564-26865771,
26867529-26867599,26867875-26867884,26869562-26870310
Length = 472
Score = 28.7 bits (61), Expect = 1.8
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Frame = +1
Query: 13 EKVIVVKHGQDVTIPCKVTGLPAPKVVWSHNA--KPLSGGRATVSDSGLVIKGVQKGDTG 186
E V+VV GQDV CK G ++ S N+ K + G +S G + K D
Sbjct: 380 EAVVVVAKGQDVQGTCKY-GTRVDYILASPNSPYKFVPGSYTVISSKGTSDHHIVKVDVT 438
Query: 187 YYGCRATNEHGDEYFETLLQVN 252
+ T+E + ++++N
Sbjct: 439 IQDKKETDEESGNQRQRVVKIN 460
>03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,
6627009-6627116,6627194-6627328,6627429-6627528,
6627763-6627974,6628060-6628125,6628231-6628464,
6628583-6628641,6628716-6628782,6628863-6629192,
6629267-6629335,6629417-6629503,6629605-6629692,
6630057-6630178,6630251-6630355,6630442-6630485,
6630558-6630627,6630711-6630814,6630980-6631189,
6632935-6633018,6633291-6634003,6634115-6634649,
6634703-6634789,6634826-6634970,6635049-6635125,
6635215-6635359,6635462-6635626,6635725-6635958
Length = 1761
Score = 28.7 bits (61), Expect = 1.8
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = +1
Query: 76 PAPKVVWSHNAKPLSGGRATVSDSGLVIKGVQKGDTG 186
PAPK V S A SG + SDSG +G D G
Sbjct: 1206 PAPKAVQSQPAPKRSGDGGSSSDSGSSKEGGSSSDRG 1242
>05_01_0421 +
3308692-3309070,3309199-3309339,3309776-3309897,
3310369-3310632,3310719-3310849,3311254-3311461,
3311564-3311632,3311722-3311799,3312448-3312621
Length = 521
Score = 28.3 bits (60), Expect = 2.4
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 83 PRSS-GAITRSL*AVAGLRSVTAVWSSKAYKRVTRDTTAAELLTSTEMNT 229
PRSS G +TRS V L V SSK +R+ ++ AA TST T
Sbjct: 42 PRSSSGRLTRSRAKV--LEESAGVSSSKKKRRIEEESPAATTTTSTTATT 89
>03_02_0039 -
5213699-5214775,5214815-5215093,5215300-5215776,
5216073-5216438
Length = 732
Score = 27.9 bits (59), Expect = 3.1
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 16 KVIVVKHGQDVTIPCKVTGLPAPKVVWSHNAKPLSGGRATVS 141
+ +VVKHG+ VT P + + H +PLSG A V+
Sbjct: 265 QAVVVKHGEAVTPPSRQDA--TKNITDVHKHQPLSGEHAIVA 304
>12_02_0298 + 17041206-17041712
Length = 168
Score = 27.1 bits (57), Expect = 5.5
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = +1
Query: 82 PKVVWSHNAKPLSGGRATVSDSGLVIKGVQKG 177
P WS + KP G A+ G++++ ++G
Sbjct: 135 PNSAWSKSGKPTEAGGASARKGGVLVRKEERG 166
>08_02_1557 + 27867977-27869134
Length = 385
Score = 27.1 bits (57), Expect = 5.5
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +2
Query: 146 AVWSSKAYKRVTRDTTAAELLTSTEMNTSRP 238
A W K Y R+ RD +A E L M S P
Sbjct: 322 ADWGEKGYIRMKRDVSAKEGLCGIAMEASYP 352
>01_03_0148 - 13153782-13154870,13155823-13156672,13156698-13157008
Length = 749
Score = 27.1 bits (57), Expect = 5.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 143 TAVWSSKAYKRVTRDTTAA 199
+A W+ K YK +T D TAA
Sbjct: 614 SAAWTEKRYKELTADVTAA 632
>01_01_0753 -
5814087-5814344,5814461-5814646,5814847-5815004,
5815082-5815214,5815299-5815489,5815826-5816281,
5816543-5816661,5816729-5816872,5816994-5817065,
5817368-5817500,5817598-5817733
Length = 661
Score = 26.6 bits (56), Expect = 7.2
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 121 RLEASRYGSRRPWALADRSPC 59
R+EA +G+ R W AD +PC
Sbjct: 55 RVEADPHGALRDWDPADATPC 75
>04_01_0326 +
4321219-4321391,4321497-4321577,4321787-4321842,
4323318-4323379,4323743-4323926,4324237-4324283
Length = 200
Score = 26.2 bits (55), Expect = 9.5
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -3
Query: 101 WLQTTLGAGRPVTLHGIVTSC 39
WL+ G RP+++H VT C
Sbjct: 43 WLRIRGGDSRPISVHRFVTDC 63
>01_06_1593 +
38502884-38502993,38503580-38503665,38504352-38504497,
38504817-38504933,38505028-38505144,38505858-38506001,
38506099-38506251
Length = 290
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 200 LQP*YPVSPFCTPLMTRPLSLTVALPPLRGF 108
L P V PFCT L+ + + +LPP F
Sbjct: 49 LAPFVQVLPFCTRLLNQEILRASSLPPNHNF 79
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,529,396
Number of Sequences: 37544
Number of extensions: 183525
Number of successful extensions: 509
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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