Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_K12
(400 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55350.4 68414.m06326 calpain-type cysteine protease family i... 29 1.5
At1g55350.3 68414.m06325 calpain-type cysteine protease family i... 29 1.5
At1g55350.2 68414.m06324 calpain-type cysteine protease family i... 29 1.5
At1g55350.1 68414.m06323 calpain-type cysteine protease family i... 29 1.5
At1g50980.1 68414.m05731 F-box family protein contains F-box dom... 27 4.6
At5g48880.2 68418.m06047 acetyl-CoA C-acyltransferase 1 / 3-keto... 26 8.0
At5g48880.1 68418.m06046 acetyl-CoA C-acyltransferase 1 / 3-keto... 26 8.0
At4g02740.1 68417.m00374 F-box family protein contains Pfam PF00... 26 8.0
At1g02340.1 68414.m00180 long hypocotyl in far-red 1 (HFR1) / re... 26 8.0
>At1g55350.4 68414.m06326 calpain-type cysteine protease family
identical to calpain-like protein GI:20268660 from
[Arabidopsis thaliana]; contains Pfam profiles: PF00648
Calpain family cysteine protease, PF01067 Calpain large
subunit,domain III; identical to cDNA calpain-like
protein GI:20268659
Length = 2151
Score = 28.7 bits (61), Expect = 1.5
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 125 PPLRGFALWLQTTLGAGRPVTLHGIVTSCP 36
P ++GF LW+ L AG ++L I+++ P
Sbjct: 757 PRIKGFILWICVVLFAGSVISLGAIISAKP 786
>At1g55350.3 68414.m06325 calpain-type cysteine protease family
identical to calpain-like protein GI:20268660 from
[Arabidopsis thaliana]; contains Pfam profiles: PF00648
Calpain family cysteine protease, PF01067 Calpain large
subunit,domain III; identical to cDNA calpain-like
protein GI:20268659
Length = 2151
Score = 28.7 bits (61), Expect = 1.5
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 125 PPLRGFALWLQTTLGAGRPVTLHGIVTSCP 36
P ++GF LW+ L AG ++L I+++ P
Sbjct: 757 PRIKGFILWICVVLFAGSVISLGAIISAKP 786
>At1g55350.2 68414.m06324 calpain-type cysteine protease family
identical to calpain-like protein GI:20268660 from
[Arabidopsis thaliana]; contains Pfam profiles: PF00648
Calpain family cysteine protease, PF01067 Calpain large
subunit,domain III; identical to cDNA calpain-like
protein GI:20268659
Length = 2151
Score = 28.7 bits (61), Expect = 1.5
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 125 PPLRGFALWLQTTLGAGRPVTLHGIVTSCP 36
P ++GF LW+ L AG ++L I+++ P
Sbjct: 757 PRIKGFILWICVVLFAGSVISLGAIISAKP 786
>At1g55350.1 68414.m06323 calpain-type cysteine protease family
identical to calpain-like protein GI:20268660 from
[Arabidopsis thaliana]; contains Pfam profiles: PF00648
Calpain family cysteine protease, PF01067 Calpain large
subunit,domain III; identical to cDNA calpain-like
protein GI:20268659
Length = 2151
Score = 28.7 bits (61), Expect = 1.5
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 125 PPLRGFALWLQTTLGAGRPVTLHGIVTSCP 36
P ++GF LW+ L AG ++L I+++ P
Sbjct: 757 PRIKGFILWICVVLFAGSVISLGAIISAKP 786
>At1g50980.1 68414.m05731 F-box family protein contains F-box domain
Pfam:PF00646
Length = 370
Score = 27.1 bits (57), Expect = 4.6
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -3
Query: 158 MTRPLSLTVALPPLRGFALWLQTTLGAGRPVTLHGIVTSCP 36
+T + T+ +P LR L + T G RP +HG V + P
Sbjct: 164 LTNVMIFTIDVPTLR--ILSIDNTSGKSRPKGVHGFVINTP 202
>At5g48880.2 68418.m06047 acetyl-CoA C-acyltransferase 1 /
3-ketoacyl-CoA thiolase 1 (PKT1) identical to
3-keto-acyl-CoA-thiolase 1 [Arabidopsis thaliana]
GI:3169568
Length = 457
Score = 26.2 bits (55), Expect = 8.0
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +1
Query: 1 EQKPEKVIVVKHGQDVTIPCKVTGLPAPKVVWSHNAKPLSGGRATVSD-SGLVI 159
E K EK IVV V + L K V+ N +G + +SD +G V+
Sbjct: 250 ETKAEKAIVVSVDDGVRPNSNMADLAKLKTVFKQNGSTTAGNASQISDGAGAVL 303
>At5g48880.1 68418.m06046 acetyl-CoA C-acyltransferase 1 /
3-ketoacyl-CoA thiolase 1 (PKT1) identical to
3-keto-acyl-CoA-thiolase 1 [Arabidopsis thaliana]
GI:3169568
Length = 414
Score = 26.2 bits (55), Expect = 8.0
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +1
Query: 1 EQKPEKVIVVKHGQDVTIPCKVTGLPAPKVVWSHNAKPLSGGRATVSD-SGLVI 159
E K EK IVV V + L K V+ N +G + +SD +G V+
Sbjct: 207 ETKAEKAIVVSVDDGVRPNSNMADLAKLKTVFKQNGSTTAGNASQISDGAGAVL 260
>At4g02740.1 68417.m00374 F-box family protein contains Pfam
PF00646: F-box domain; similar to F-box protein FBL2
(GI:6063090) [Homo sapiens]
Length = 645
Score = 26.2 bits (55), Expect = 8.0
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -3
Query: 65 TLHGIVTSCPCFTTITFSGF 6
T+ VTSCP TT+ GF
Sbjct: 538 TVEAFVTSCPSLTTLKLVGF 557
>At1g02340.1 68414.m00180 long hypocotyl in far-red 1 (HFR1) /
reduced phytochrome signaling (REP1) / basic
helix-loop-helix FBI1 protein (FBI1) / reduced
sensitivity to far-red light (RSF1) / bHLH protein 26
(BHLH026) (BHLH26) identical to SP|Q9FE22 Long hypocotyl
in far-red 1 (bHLH-like protein HFR1) (Reduced
phytochrome signaling) (Basic helix-loop-helix FBI1
protein) (Reduced sensitivity to far-red light)
[Arabidopsis thaliana]
Length = 292
Score = 26.2 bits (55), Expect = 8.0
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -3
Query: 149 PLSLTVALPPLRGFALWLQTTLGAGRPVTLHGIVTSCPCF 30
P ++ P +L+L T+ A P +LHG+V P F
Sbjct: 242 PPFTNISFPHSSSQSLFLTTSSPASSPQSLHGLVPYFPSF 281
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,578,760
Number of Sequences: 28952
Number of extensions: 140113
Number of successful extensions: 363
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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