Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_K11
         (574 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr...   161   7e-41
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    29   0.48 
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   3.4  
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    26   3.4  
SPBC20F10.04c |nse4|rad62|Smc5-6 complex non-SMC subunit Nse4|Sc...    26   3.4  
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    25   6.0  
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   6.0  
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    25   7.9  

>SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 322

 Score =  161 bits (391), Expect = 7e-41
 Identities = 80/145 (55%), Positives = 101/145 (69%), Gaps = 2/145 (1%)
 Frame = +1

Query: 1   ANVTLISPFVGRILDWFVEHTNKTYEPKEDPGVLSVTRVYNYYKKFGYKTQVMGASFRNT 180
           ANVTLISPFVGRILD++    N+ Y  +EDPGV+SV+ ++NYYKKFGYKT VMGASFRN 
Sbjct: 170 ANVTLISPFVGRILDFYKAKNNRDYTAQEDPGVVSVSNIFNYYKKFGYKTIVMGASFRNV 229

Query: 181 GEIRELAGCDLLTISPKLLQELAGSDHPLKRVLDPKLSEQSDIEKIS--LSESQFRWQMN 354
           GEI+ELAG D LTISP LL++L  S   + + LD   +   ++EK+S    E +FR+  N
Sbjct: 230 GEIKELAGVDFLTISPALLEQLNNSTDAVPKKLDASKASSLNLEKVSYLTDEPKFRFDFN 289

Query: 355 EDQMATDKLSDGIRKFAADTRKLES 429
            D+MA  KLS GI  FA D   L +
Sbjct: 290 NDEMAVVKLSTGIAAFAKDADTLRT 314


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = +1

Query: 241 ELAGSDHPLKRVLDPKLSEQSDIEKISL 324
           EL G +  LKRVL+P L +QS I +I++
Sbjct: 376 ELQGIEILLKRVLEPYLKDQSKISEIAV 403


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
 Frame = -3

Query: 434 IRDSSFLVSAANFRIPSDNLSVAI*SSFICQRNCDSD-NDIFSMSLCSDNFGSS----TL 270
           I + S+  S    R+P +  S+AI +  I +RN D D +D+ S+ L   N   S    TL
Sbjct: 166 ILNYSYRESCFKCRVPRNQASIAIGNHKISKRNGDMDVSDVPSVYLILRNLDRSLSEETL 225

Query: 269 FNGWS 255
           + G S
Sbjct: 226 WKGLS 230


>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -1

Query: 157 SLESYNRTSCNSYRHELLTKRLDLPLARTSY 65
           SLES  R+S  SY  E + KRLD  L   S+
Sbjct: 548 SLESAIRSSNASYEPEYVLKRLDARLLELSH 578


>SPBC20F10.04c |nse4|rad62|Smc5-6 complex non-SMC subunit
           Nse4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
 Frame = +2

Query: 368 QLTNYPMGYENLPRIQE---NWSLLSK 439
           Q  NYP  + N+ RIQE    WS L K
Sbjct: 94  QFLNYPTSHSNVTRIQEIDTAWSRLGK 120


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +1

Query: 52  VEHTNKTYEPKEDPGVLSVTRVYNYYKKFGYKTQVMGASF 171
           V H  K Y   +     +  RVY+   K G K +V+G ++
Sbjct: 488 VMHVTKLYNTVDANNFYAFARVYSGQVKKGQKVKVLGENY 527


>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -3

Query: 479 FYKIYFIHFLAKSVLIRDSSFLVSAANFRIPSDNLSVAI 363
           + K++F+H L  S    +  FL+  AN  +   N+ V +
Sbjct: 194 YSKVFFLHLLQHSDSSFNDKFLLLLANIPVTVSNVEVLL 232


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
 Frame = +1

Query: 235 LQELAGSDHPLKRVLDPKL---SEQSDIEKI-SLSESQFRWQMNEDQMATDKLSDGIRKF 402
           L+EL GSD PL++V    L   S++   E I S S+     +  +D +    L     KF
Sbjct: 3   LKELLGSDAPLEKVCSALLEYESKRKSSENIDSESKKTNLLEDEQDDIEPVWLQLATLKF 62

Query: 403 AADTRKL 423
             + RKL
Sbjct: 63  IGNNRKL 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,296,165
Number of Sequences: 5004
Number of extensions: 47334
Number of successful extensions: 132
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)