Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_K11
         (574 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0355 - 3122374-3122520,3122912-3123047,3123124-3123221,312...    59   3e-09
04_03_0972 + 21347212-21347284,21347966-21348009,21348153-213482...    32   0.37 
11_06_0057 + 19683226-19684055,19685742-19687824                       29   2.0  
10_08_0273 + 16395117-16395444,16397030-16397135,16397174-16397321     29   2.6  
10_07_0124 - 13085820-13085997,13086235-13086362,13086475-130865...    28   4.6  

>08_01_0355 -
           3122374-3122520,3122912-3123047,3123124-3123221,
           3123724-3123801,3123876-3123945,3124452-3124516,
           3124606-3124686,3124822-3124926,3125002-3125085,
           3125175-3125250,3125358-3125436,3125526-3125646,
           3125768-3125827
          Length = 399

 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 43/154 (27%), Positives = 72/154 (46%), Gaps = 12/154 (7%)
 Frame = +1

Query: 1   ANVTLISPFVGRILDWFVEHT-----NKTYEPKEDPGVLSVTRVYNYYKKFGYKTQVMGA 165
           A  +++  FVGR+ DW   H+     ++  +  ED G+    +VY Y  K GYKT++M A
Sbjct: 234 AGASVVQIFVGRVRDWARTHSGDPEIDEALKKGEDAGLALAKKVYAYIHKNGYKTKLMAA 293

Query: 166 SFRNTGEIRELAGCDLLTISPKLLQELAGS--DHPLKRVLDPKLSEQSDIEKISLSESQF 339
           + RN  ++  L G D +    K+LQ L  S  D  +K    P+L+           E   
Sbjct: 294 AIRNKQDVFSLLGIDYIIAPLKILQSLEESVTDTDVKYGYVPRLTPALGKTYNFTEEELV 353

Query: 340 RW-QMN----EDQMATDKLSDGIRKFAADTRKLE 426
           +W Q++        A + L+ G+  +    R++E
Sbjct: 354 KWDQLSLAAAMGPAAEELLASGLEGYVNQARRVE 387


>04_03_0972 +
           21347212-21347284,21347966-21348009,21348153-21348237,
           21348810-21349358,21350291-21350416,21350772-21350936,
           21351243-21351310,21351529-21351618,21351740-21351830,
           21352214-21352812
          Length = 629

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 12/53 (22%), Positives = 28/53 (52%)
 Frame = +1

Query: 238 QELAGSDHPLKRVLDPKLSEQSDIEKISLSESQFRWQMNEDQMATDKLSDGIR 396
           +EL G+D+ L  ++DP +++  D++++ +      W  + D  A   +   +R
Sbjct: 490 RELIGTDYRLHELVDPAVADAFDLDELQVMADVIHWCTHRDGAARPSMKQVLR 542


>11_06_0057 + 19683226-19684055,19685742-19687824
          Length = 970

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 323 NDIFSMSLCSDNFGSSTLFNGWSLPAN 243
           +++ S ++CS NFGS    + WS P N
Sbjct: 731 SNLQSFAICSRNFGSLEFLDSWSPPPN 757


>10_08_0273 + 16395117-16395444,16397030-16397135,16397174-16397321
          Length = 193

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 52  VEHTNKTYEPKEDPGVLSVTRVYNYYKKFGYKTQVMGAS 168
           ++H N ++   ED  VL V R YNY   FG + Q +  S
Sbjct: 88  MQHGNTSFRVCEDGRVL-VCRFYNYNSSFGTRRQPLSVS 125


>10_07_0124 -
           13085820-13085997,13086235-13086362,13086475-13086550,
           13086726-13086803,13086985-13087064,13087411-13087480,
           13087730-13087887,13088225-13088315,13088379-13088455,
           13088612-13088686,13088798-13089071,13089911-13090041,
           13090154-13090323,13090413-13090971,13091077-13091127
          Length = 731

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 20/66 (30%), Positives = 28/66 (42%)
 Frame = +1

Query: 166 SFRNTGEIRELAGCDLLTISPKLLQELAGSDHPLKRVLDPKLSEQSDIEKISLSESQFRW 345
           +FR+  E  E  GC L  +S   L E  G     + +L   LS+  D+  I    S +  
Sbjct: 214 TFRDLAEYLESNGCHLAKLSATELSEKNGVGCCFRSLLRQLLSDVPDVADIFALASWYSA 273

Query: 346 QMNEDQ 363
             N DQ
Sbjct: 274 AENYDQ 279


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,966,583
Number of Sequences: 37544
Number of extensions: 282469
Number of successful extensions: 736
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)