Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_K11
         (574 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3138| Best HMM Match : Transaldolase (HMM E-Value=0)               186   9e-48
SB_12081| Best HMM Match : DM (HMM E-Value=2)                          31   0.67 
SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.88 
SB_16515| Best HMM Match : Extensin_2 (HMM E-Value=0.12)               29   2.0  
SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_33080| Best HMM Match : SEP (HMM E-Value=4.48416e-44)               28   4.7  
SB_50214| Best HMM Match : RNA_capsid (HMM E-Value=9.8)                27   8.2  
SB_52116| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  

>SB_3138| Best HMM Match : Transaldolase (HMM E-Value=0)
          Length = 224

 Score =  186 bits (454), Expect = 9e-48
 Identities = 89/143 (62%), Positives = 106/143 (74%), Gaps = 1/143 (0%)
 Frame = +1

Query: 1   ANVTLISPFVGRILDWFVEHTN-KTYEPKEDPGVLSVTRVYNYYKKFGYKTQVMGASFRN 177
           A VTLISPFVGRI DW+V  T  K YEP EDPGV SVT +YNYYKKFGYKT VMGASFRN
Sbjct: 72  AGVTLISPFVGRIYDWYVAKTGQKEYEPHEDPGVKSVTAIYNYYKKFGYKTVVMGASFRN 131

Query: 178 TGEIRELAGCDLLTISPKLLQELAGSDHPLKRVLDPKLSEQSDIEKISLSESQFRWQMNE 357
            G+I  L GCD LTISP LL++L  S+  + + L  + + + DIEK+ + E  FRW +NE
Sbjct: 132 VGQITGLTGCDKLTISPSLLEKLQNSNEAITQKLSSEEAGKLDIEKVEVDEKSFRWLLNE 191

Query: 358 DQMATDKLSDGIRKFAADTRKLE 426
           D MAT+KL++GIRKFA D  KLE
Sbjct: 192 DAMATEKLAEGIRKFAVDAVKLE 214


>SB_12081| Best HMM Match : DM (HMM E-Value=2)
          Length = 111

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 287 NCLNKATSKRYRYRSHSSVGK*MKIKWQLTN 379
           N ++K  +KR RYR +   GK M  KW+L N
Sbjct: 35  NKVDKTPNKRKRYRKYKLKGKTMLSKWRLCN 65


>SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 12/63 (19%)
 Frame = -1

Query: 187 SRRCYGT---RRPSLESYNRTSCNSYR-HELLTKRLDLPLA--------RTSYLYVLRTS 44
           SRRC  T   +   L+  +R S +SY  H+ L  R D P +        RT YLYV+ TS
Sbjct: 62  SRRCKTTASAKLACLQVDSRGSPSSYNGHQFLVFRTDFPFSKHKNRFKRRTKYLYVITTS 121

Query: 43  PKY 35
            K+
Sbjct: 122 TKH 124


>SB_16515| Best HMM Match : Extensin_2 (HMM E-Value=0.12)
          Length = 917

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 17/44 (38%), Positives = 26/44 (59%)
 Frame = +1

Query: 238 QELAGSDHPLKRVLDPKLSEQSDIEKISLSESQFRWQMNEDQMA 369
           +E   S  P +R L P  S  +DI ++S SE++FR +MN +  A
Sbjct: 717 RERTPSQFPRQR-LQPDASPDADISEMSESEARFRERMNLEMEA 759


>SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1050

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/48 (29%), Positives = 19/48 (39%)
 Frame = -3

Query: 347 CQRNCDSDNDIFSMSLCSDNFGSSTLFNGWSLPANSCNSLGLMVSRSH 204
           C  NC   ND F    C  + G+    +GW  P  + N +    S  H
Sbjct: 338 CTTNCTPRNDSFGHYECDSSTGAVVCHSGWYGPTCTVNCIPRNDSGGH 385


>SB_33080| Best HMM Match : SEP (HMM E-Value=4.48416e-44)
          Length = 268

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -1

Query: 208 RIRPTLGSRRCYGTRRPSLESYNRTSCNSYRHELLTKR 95
           R+    G+RR   T  P    Y RTSC    H+LL  +
Sbjct: 39  RVFRETGARRLSDTETPLQTVYTRTSCLKRLHDLLNDK 76


>SB_50214| Best HMM Match : RNA_capsid (HMM E-Value=9.8)
          Length = 468

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 346 QMNEDQMATDKLSDGIRKFAADTRKLES 429
           ++   Q ATD+LS+G RK A D  K E+
Sbjct: 89  ELGSRQNATDRLSEGKRKPATDDTKQET 116


>SB_52116| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1084

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +1

Query: 172 RNTGEIRELAGCDLLTISPKLLQELAGSDHPLKRVL 279
           R TG   EL    ++T SP++ Q L G  H  KR+L
Sbjct: 648 RETGTHSEL----IMTFSPRVFQNLKGFRHNTKRIL 679


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,892,734
Number of Sequences: 59808
Number of extensions: 346190
Number of successful extensions: 763
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)