Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_K11
         (574 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006729-2|AAM15613.1|  165|Caenorhabditis elegans Hypothetical ...   182   1e-46
AC006729-1|AAK93861.1|  319|Caenorhabditis elegans Hypothetical ...   182   1e-46
AC084159-6|AAK39360.1|   97|Caenorhabditis elegans Hypothetical ...    99   1e-21
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    36   0.015
U13070-7|AAC46638.1|  414|Caenorhabditis elegans Rabaptin (rab e...    29   3.1  
AF000266-1|AAC71170.1|  193|Caenorhabditis elegans Hypothetical ...    27   7.2  

>AC006729-2|AAM15613.1|  165|Caenorhabditis elegans Hypothetical
           protein Y24D9A.8b protein.
          Length = 165

 Score =  182 bits (444), Expect = 1e-46
 Identities = 86/143 (60%), Positives = 108/143 (75%), Gaps = 1/143 (0%)
 Frame = +1

Query: 1   ANVTLISPFVGRILDWFVEHTN-KTYEPKEDPGVLSVTRVYNYYKKFGYKTQVMGASFRN 177
           + VTLISPFVGRI+DWFV++T+ K Y  K+DPGV+SVTR++NYYKK+ YKTQVM ASFRN
Sbjct: 16  SGVTLISPFVGRIMDWFVKNTDQKAYTRKDDPGVVSVTRIFNYYKKYDYKTQVMAASFRN 75

Query: 178 TGEIRELAGCDLLTISPKLLQELAGSDHPLKRVLDPKLSEQSDIEKISLSESQFRWQMNE 357
           T EI+ L GCDLLTISP LL++LA        VL    ++  D+ K+S+ E  FRW +NE
Sbjct: 76  TEEIKGLVGCDLLTISPALLKQLAAETELAPVVLSTSHAKTLDLPKVSIDEKAFRWALNE 135

Query: 358 DQMATDKLSDGIRKFAADTRKLE 426
           D MAT+KL++GIR FA D R LE
Sbjct: 136 DAMATEKLAEGIRNFAKDARTLE 158


>AC006729-1|AAK93861.1|  319|Caenorhabditis elegans Hypothetical
           protein Y24D9A.8a protein.
          Length = 319

 Score =  182 bits (444), Expect = 1e-46
 Identities = 86/143 (60%), Positives = 108/143 (75%), Gaps = 1/143 (0%)
 Frame = +1

Query: 1   ANVTLISPFVGRILDWFVEHTN-KTYEPKEDPGVLSVTRVYNYYKKFGYKTQVMGASFRN 177
           + VTLISPFVGRI+DWFV++T+ K Y  K+DPGV+SVTR++NYYKK+ YKTQVM ASFRN
Sbjct: 170 SGVTLISPFVGRIMDWFVKNTDQKAYTRKDDPGVVSVTRIFNYYKKYDYKTQVMAASFRN 229

Query: 178 TGEIRELAGCDLLTISPKLLQELAGSDHPLKRVLDPKLSEQSDIEKISLSESQFRWQMNE 357
           T EI+ L GCDLLTISP LL++LA        VL    ++  D+ K+S+ E  FRW +NE
Sbjct: 230 TEEIKGLVGCDLLTISPALLKQLAAETELAPVVLSTSHAKTLDLPKVSIDEKAFRWALNE 289

Query: 358 DQMATDKLSDGIRKFAADTRKLE 426
           D MAT+KL++GIR FA D R LE
Sbjct: 290 DAMATEKLAEGIRNFAKDARTLE 312


>AC084159-6|AAK39360.1|   97|Caenorhabditis elegans Hypothetical
           protein Y73B3A.2 protein.
          Length = 97

 Score =   99 bits (238), Expect = 1e-21
 Identities = 48/90 (53%), Positives = 61/90 (67%)
 Frame = +1

Query: 157 MGASFRNTGEIRELAGCDLLTISPKLLQELAGSDHPLKRVLDPKLSEQSDIEKISLSESQ 336
           M ASFRNT EI+ L GCDLLTISP LL++LA        VL    ++  D+ K+S+ E  
Sbjct: 1   MAASFRNTEEIKGLVGCDLLTISPALLKQLAAETEFAPVVLSTSHAKTLDLPKVSIDEKA 60

Query: 337 FRWQMNEDQMATDKLSDGIRKFAADTRKLE 426
           FRW +N+D MAT+KL++GIR FA D R LE
Sbjct: 61  FRWALNDDAMATEKLAEGIRNFAKDARTLE 90


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
            interacting proteinprotein 1 protein.
          Length = 2153

 Score = 36.3 bits (80), Expect = 0.015
 Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 2/125 (1%)
 Frame = -3

Query: 371  VAI*SSFICQRNCDSDNDIFSMSLCSDN--FGSSTLFNGWSLPANSCNSLGLMVSRSHPA 198
            V + +S     +C S +   S   CS N   G + L +  +   ++ ++L  +VS   P 
Sbjct: 2018 VTVCTSLNLANSCASIDGGLSGCCCSTNNCVGPNVLPSAGTTQPSTVSTLSPIVSTLSPI 2077

Query: 197  NSRISPVLRNEAPIT*VL*PNFL**L*TRVTDKTPGSSFGSYVLFVCSTNQSKIRPTNGE 18
             S +SP++   +PI   L P  +  L +  T  TP +     VL   +T QS    T G 
Sbjct: 2078 VSTLSPIVSTLSPIVSTLSPT-VSTLSSNATSLTPSNP----VLVSTATTQSPATTTKGS 2132

Query: 17   ISVTF 3
             S+TF
Sbjct: 2133 SSITF 2137


>U13070-7|AAC46638.1|  414|Caenorhabditis elegans Rabaptin (rab
           effector) protein 5 protein.
          Length = 414

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 232 LLQELAGSDHPLKRVLDPKLSEQSDIEKISLSESQFRWQMNED 360
           L QEL  S+   +  +    S Q  +EKI  SE + RWQ ++D
Sbjct: 304 LQQELDTSEVVQRDFVKLSQSLQIQLEKIRQSEQEVRWQWDDD 346


>AF000266-1|AAC71170.1|  193|Caenorhabditis elegans Hypothetical
           protein W08F4.5 protein.
          Length = 193

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 22/74 (29%), Positives = 32/74 (43%)
 Frame = -1

Query: 364 FDLHSFANGTVTPITISFRCRFVQTISDLVPSSTGGHCRPTLAIA*G*WSADRIRPTLGS 185
           F +    NG + P TIS R R ++ +  L P    G+CR    +  G W  D +      
Sbjct: 118 FGISMGGNGRIGPETISARRRSLEFLRTLAPH---GNCRRFEGVDIGKW--DGLPRQADG 172

Query: 184 RRCYGTRRPSLESY 143
            R   TR  +L +Y
Sbjct: 173 IRVENTRGRTLRNY 186


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,540,514
Number of Sequences: 27780
Number of extensions: 259344
Number of successful extensions: 757
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)