Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_K11
         (574 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g12230.1 68414.m01415 transaldolase, putative similar to Swis...    66   2e-11
At3g02590.1 68416.m00250 delta 7-sterol-C5-desaturase, putative ...    29   2.9  
At2g22030.1 68415.m02615 kelch repeat-containing F-box family pr...    29   2.9  
At5g26160.1 68418.m03111 expressed protein                             27   6.7  
At4g37870.1 68417.m05356 phosphoenolpyruvate carboxykinase [ATP]...    27   6.7  
At4g21710.1 68417.m03144 DNA-directed RNA polymerase II 135 kDa ...    27   6.7  
At5g57460.1 68418.m07181 expressed protein                             27   8.9  
At3g11080.1 68416.m01339 disease resistance family protein conta...    27   8.9  
At1g27190.1 68414.m03312 leucine-rich repeat transmembrane prote...    27   8.9  

>At1g12230.1 68414.m01415 transaldolase, putative similar to
           Swiss-Prot:P30148 transaldolase B (EC 2.2.1.2)
           [Escherichia coli O157:H7]
          Length = 405

 Score = 65.7 bits (153), Expect = 2e-11
 Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
 Frame = +1

Query: 1   ANVTLISPFVGRILDWFVEHTNKT-----YEPKEDPGVLSVTRVYNYYKKFGYKTQVMGA 165
           A  ++I  FVGR+ DW   H+  T      +  EDPG+  V R YNY  K+GYK+++M A
Sbjct: 239 AGASVIQIFVGRLRDWARNHSGDTEIESAIKSGEDPGLALVKRSYNYIHKYGYKSKLMAA 298

Query: 166 SFRNTGEIRELAGCDLLTISPKLLQELAGS 255
           + RN  ++  L G D +    K+LQ L  S
Sbjct: 299 AVRNKQDLFSLLGVDYVIAPLKVLQSLKDS 328


>At3g02590.1 68416.m00250 delta 7-sterol-C5-desaturase, putative
           similar to delta7 sterol C-5 desaturase GI:5031219 from
           [Arabidopsis thaliana]
          Length = 279

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 476 KNSLITNYI*DITGFISCFWNFYYKLTYY 562
           +N L  N +  I+GF+ CF+ +Y KL  Y
Sbjct: 45  RNYLAGNILYFISGFLWCFYIYYLKLNVY 73


>At2g22030.1 68415.m02615 kelch repeat-containing F-box family
           protein low similarity to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 383

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +1

Query: 22  PFVGRILDWFVEHTNKTYEPKEDPGVLSVTRVYNYY 129
           PF+GR LDWF  + N     ++   VL+  +V++YY
Sbjct: 88  PFLGRRLDWFTLNPN-----EKKTSVLNSFQVFSYY 118


>At5g26160.1 68418.m03111 expressed protein 
          Length = 1058

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
 Frame = -3

Query: 341 RNCDSDNDIF--SMSLCSDNFGS 279
           R CD D++ F  S+ +CSD FGS
Sbjct: 553 RECDFDDNSFDNSLCVCSDGFGS 575


>At4g37870.1 68417.m05356 phosphoenolpyruvate carboxykinase [ATP],
           putative / PEP carboxykinase, putative / PEPCK, putative
           similar to phosphoenolpyruvate carboxykinase
           [Lycopersicon esculentum] GI:16950587, SP|Q9SLZ0
           Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
           (PEP carboxykinase) (Phosphoenolpyruvate carboxylase)
           (PEPCK) {Zea mays}; contains Pfam profile PF01293:
           phosphoenolpyruvate carboxykinase
          Length = 671

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = -1

Query: 205 IRPTLGSRRCYGTRRPSLESYNRTSCNSYRHELLTK-RLDLPLARTSYLYVLRTSPKYVR 29
           IRPT      +GT   ++ +  +  CN Y H + +   +DL LAR   + +L T  +Y  
Sbjct: 274 IRPTQEELESFGTPDFTIYNAGQFPCNRYTHYMTSSTSVDLNLARRE-MVILGT--QYAG 330

Query: 28  QMVK 17
           +M K
Sbjct: 331 EMKK 334


>At4g21710.1 68417.m03144 DNA-directed RNA polymerase II 135 kDa
            polypeptide / RNA polymerase II subunit 2 (RPB135) (RPB2)
            (RP140) identical to SP|P38420 DNA-directed RNA
            polymerase II 135 kDa polypeptide (EC 2.7.7.6) (RNA
            polymerase II subunit 2) {Arabidopsis thaliana}
          Length = 1188

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 14/62 (22%), Positives = 31/62 (50%)
 Frame = +3

Query: 297  TKRHRKDIVIGVTVPLANE*RSNGN*QIIRWDTKICRGYKKTGVSYQNTFS*KMNKINFI 476
            T+   +D++IG T P++ +     + +  R D  I   + +TG+  Q   +   + + F+
Sbjct: 866  TRVSGEDVIIGKTTPISQDEAQGQSSRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFV 925

Query: 477  KI 482
            K+
Sbjct: 926  KV 927


>At5g57460.1 68418.m07181 expressed protein
          Length = 646

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +1

Query: 223 SPKLLQELAGSDHPLKRVLDPKLSEQSDIEKISLSESQFRWQMNE 357
           +P L Q L   D  LK  +DP L + S    ++ ++ + +WQ+ E
Sbjct: 531 NPDLPQPLKNVDFILKLPVDPTLLKVSPKAILNRTDRELKWQIPE 575


>At3g11080.1 68416.m01339 disease resistance family protein contains
           leucine rich-repeat domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
           pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 943

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 334 VTPITISFRCRFVQTISDLVPSSTGGHCRP 245
           + P+T+SF   F+   +D+V + T   C P
Sbjct: 11  IIPVTLSFLLSFIHNFADVVAAPTRHLCLP 40


>At1g27190.1 68414.m03312 leucine-rich repeat transmembrane protein
           kinase, putative similar to CLV1 receptor kinase
           GB:AAB58929 GI:2160756 from [Arabidopsis thaliana]
          Length = 601

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -3

Query: 359 SSFICQRNCDSDNDIFSMSLCSDNFGSSTLFNGWSLPANSCNSL 228
           SSF+C  +   D+ +    L +     S+  + WS P +S +S+
Sbjct: 15  SSFLCSSSSAEDDVLCLQGLKNSLIDPSSRLSSWSFPNSSASSI 58


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,670,719
Number of Sequences: 28952
Number of extensions: 238739
Number of successful extensions: 673
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)