Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_K07
         (585 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF comple...    27   2.0  
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    26   3.5  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    26   4.7  
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc...    25   6.2  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   6.2  
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|...    25   6.2  

>SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF complex
           beta subunit Tfg2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 438 DPVLITNKRDELALKLELKTDYAG 509
           D + I NKR   ALK  LK +Y G
Sbjct: 231 DSIAILNKRGPYALKYSLKPEYKG 254


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
 Frame = +3

Query: 90  LITVVLSALVTRVSLTPLCNNTAVSITSN------DSPPFNNADPVMQLYNSVIVSDYKA 251
           LI   L    ++VSL+P+ +  + S+T++       S P  +  P M+  +S + S  ++
Sbjct: 288 LIAQNLHTSASQVSLSPMASTASSSVTNSPVDTHTPSTPIMSRPPSMKALSSGVESQDES 347

Query: 252 AVKTTFQL 275
              + FQ+
Sbjct: 348 VASSNFQV 355


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = +3

Query: 129 SLTPLCNNTAVSITSNDSPPFNNADPVMQLYNSVIVSD--YKAAVKTTFQLEKECRSDVI 302
           +LTP   + A S  +  +PP +N +    + +   +++  +K+ V+T    E   +S+  
Sbjct: 205 TLTPYAEDYAFSSLNTSAPPLSNKEYAFSVNHLPAINEHKWKSRVETNMLFELRIKSNDN 264

Query: 303 SSV 311
            SV
Sbjct: 265 QSV 267


>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 358

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
 Frame = +3

Query: 60  RRRIDDDKMILITVVLSALVTRVSLT------PLCNNTAVSITSNDSPPFNNADPVMQLY 221
           ++R+  +K+I    VL AL  R   T      P   +  +S+++ D P      P + LY
Sbjct: 193 KKRVAQEKVIAAKTVLLALQERHIKTKTTEHPPDLGDAMISLSTFDDPKSELFFPTILLY 252

Query: 222 NSVIVSDYKAAV 257
             V  SD+  +V
Sbjct: 253 PLVYQSDFVPSV 264


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 108 SALVTRVSLTPLCNNTAVSITSNDSPPFNNA 200
           S   T  S TPL +  + + TS  S PF N+
Sbjct: 544 STTATSASSTPLTSVNSTTATSASSTPFGNS 574



 Score = 25.0 bits (52), Expect = 8.1
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +3

Query: 93  ITVVLSALVTRVSLTPLCNNTAVSITSNDSPPFNNAD 203
           +T V S   T  S TP  N+T  S  S  +  F N +
Sbjct: 555 LTSVNSTTATSASSTPFGNSTITSSASGSTGEFTNTN 591


>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 297 VISSVVNKLLLEGQPNVVEYAYSLWY 374
           V+    NK+ ++G+PNV     + WY
Sbjct: 22  VLIDAFNKVTIDGKPNVQHQQPTYWY 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,082,680
Number of Sequences: 5004
Number of extensions: 37494
Number of successful extensions: 127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)