Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_K06
         (307 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.05c |||mitochondrial lipoate-protein ligase |Schizosacc...    29   0.20 
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    27   0.82 
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    26   1.4  
SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase |S...    25   3.3  
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ...    25   3.3  
SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual         24   5.8  
SPAC7D4.05 |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual      24   5.8  
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|...    23   7.7  

>SPAC4F10.05c |||mitochondrial lipoate-protein ligase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 219

 Score = 28.7 bits (61), Expect = 0.20
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = +2

Query: 20  TKFDSGCQITINNNKLSNMKYNVSKNVSVHSYGYNISTKTCVLFYYAGC 166
           T  ++G  +T  N+K++ +  ++ +N++ H    N+ST      Y  GC
Sbjct: 135 TTKNTGVWVT-ENDKIAAIGIHLRRNITSHGLALNVSTDLKYFNYIVGC 182


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 26.6 bits (56), Expect = 0.82
 Identities = 9/31 (29%), Positives = 23/31 (74%)
 Frame = +3

Query: 84  MLVKTSLFTVTDIISQRKHAYCSITPAAEVT 176
           +++KTS+  +TD I+++ H++  ++ A+ +T
Sbjct: 683 IMLKTSVSGITDGIAEKGHSFAKVSSASGLT 713


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 8/38 (21%), Positives = 19/38 (50%)
 Frame = +3

Query: 93  KTSLFTVTDIISQRKHAYCSITPAAEVTPIVSTPNLSV 206
           +  + T  D++ + KHA  +    A++ P++     S+
Sbjct: 758 EVDMLTYADVLKEFKHAKLTAAQIAQIVPVIKRREYSI 795


>SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 389

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 99  SLFTVTDIISQRKHAYCSITPAAEVTPIVSTPN 197
           SLF  +D++S     YC  + A    P++ T N
Sbjct: 64  SLFLASDVLSTGNLTYCIPSFAGAAQPLLRTNN 96


>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 108 TVTDIISQRKHAYCSITPAAEVTPIVSTPN 197
           TV+ ++S          P +E +PI  TPN
Sbjct: 387 TVSQLLSHYTETISQYLPPSETSPIPKTPN 416


>SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 353

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -1

Query: 244 QIYISSVNVASFLTLKLGVETIGVTSAAGVI 152
           Q+ I++V  AS+LT K+  + I   SAAG +
Sbjct: 8   QLAIAAVRRASYLTEKVFNQLIKEKSAAGAL 38


>SPAC7D4.05 |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -3

Query: 179 WSYLCSRRNRTIRMFSLRYYIRNCEQRRF 93
           WSY   +   TI    + +  RN E+R++
Sbjct: 96  WSYFSKKTGYTIHPLLIDFLKRNKEERKY 124


>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1018

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +3

Query: 147 CSITPAAEVTPIVSTPNLSVRKLATFTELI*ICYELLY 260
           C+  P+    P+V+ P    + +  F E +  C  LLY
Sbjct: 382 CNFLPSVLDLPMVNEPLEKQKGMLVFLEYVYKCLVLLY 419


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 964,079
Number of Sequences: 5004
Number of extensions: 15281
Number of successful extensions: 36
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)