Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_K06
         (307 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0813 + 6157734-6157939,6158421-6158488,6158922-6158986,615...    27   2.9  
04_04_1345 + 32792879-32794207                                         27   2.9  
11_06_0211 + 21305535-21305895,21306512-21306761,21307543-213076...    25   8.9  
08_02_1605 - 28166338-28166418,28166496-28166567,28166655-281667...    25   8.9  
08_01_1006 - 10191817-10191822,10192449-10192745,10192826-101929...    25   8.9  
08_01_0005 + 47929-48201,48663-48788,49009-49054,49188-49270,496...    25   8.9  
05_04_0040 + 17429281-17429371,17429433-17430150,17431387-174314...    25   8.9  

>06_01_0813 +
           6157734-6157939,6158421-6158488,6158922-6158986,
           6159517-6159605,6159682-6159862,6159972-6160100,
           6160187-6160320,6160424-6160637,6160720-6160904,
           6160994-6161089,6161175-6161328
          Length = 506

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = +3

Query: 96  TSLFTVTDI--ISQRKHAYCSITP 161
           TS + V DI  + QR H YC +TP
Sbjct: 294 TSYWKVKDIDPLDQRSHGYCPLTP 317


>04_04_1345 + 32792879-32794207
          Length = 442

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
 Frame = +2

Query: 86  VSKNVSVHSYGYNISTKTCVLFYY----AGCRGNSNRFNT--QLECEE 211
           V+ N ++HS G        +  Y     AGC+ N++ FNT  +L C+E
Sbjct: 248 VAYNTAIHSVGLAQGVDFAIRLYRQMVDAGCKPNASTFNTIVKLLCKE 295


>11_06_0211 +
           21305535-21305895,21306512-21306761,21307543-21307652,
           21308836-21309067,21310233-21310603,21311434-21311507,
           21311727-21311880,21312251-21312434,21313066-21313291,
           21313704-21314135,21314399-21314456,21314748-21314829,
           21315350-21315421,21316594-21316737,21317379-21317457,
           21318023-21318105,21318198-21318252,21318488-21318778
          Length = 1085

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 65  LSNMKYNVSKNVSVHSYGYNIS 130
           L ++ +N SK  S HS+GY IS
Sbjct: 555 LDSVSHNGSKPHSSHSFGYKIS 576


>08_02_1605 - 28166338-28166418,28166496-28166567,28166655-28166771,
            28166846-28166956,28167077-28167252,28167340-28167421,
            28167662-28167808,28167887-28168252,28168558-28168741,
            28169104-28169213,28169452-28169508,28169589-28169600,
            28169899-28169961,28170010-28170057,28170166-28170246,
            28170326-28170389,28170661-28170686,28170782-28170868,
            28170942-28170969,28171194-28171255,28171364-28171576,
            28171667-28171774,28171948-28172022,28172136-28172249,
            28172597-28172644,28172688-28172767,28172974-28173049,
            28173287-28173427,28173685-28173762,28175100-28175204,
            28177061-28177147,28177287-28178579
          Length = 1463

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +2

Query: 92   KNVSVHSYGYNISTKTCVLFYYAGCRGNSNRFNTQLECEE 211
            K + ++   ++    TC  FY A C  N+ +    L+C+E
Sbjct: 982  KGMDLYFQRHDGQAVTCEDFYAAMCDANNTQLPNFLQCQE 1021


>08_01_1006 -
           10191817-10191822,10192449-10192745,10192826-10192975,
           10194558-10195370
          Length = 421

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +2

Query: 23  KFDSGCQITINNNKLSNMKYNVSKNVSVHSYGYNISTKTCVLFYYAGCR 169
           K+ S   IT ++N+L  MK+ +SK  S+ S+            Y   CR
Sbjct: 355 KYVSLSGITYSSNQLRFMKFLLSKTESLQSFAVTFLYSKSNKEYVKACR 403


>08_01_0005 +
           47929-48201,48663-48788,49009-49054,49188-49270,
           49651-49728,49831-49884,50004-50138,50222-51691
          Length = 754

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 105 FTVTDIISQRKH-AYCSITPAAEVTPIVSTPNLSVRKLATF 224
           F+   + SQR   A+  + P   V+P+VS+P L    + +F
Sbjct: 433 FSSVPVQSQRPSPAFMPVRPPISVSPLVSSPQLEGAAVPSF 473


>05_04_0040 +
           17429281-17429371,17429433-17430150,17431387-17431435,
           17431540-17431785,17432266-17432673
          Length = 503

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 11  PMITKFDSGCQITINNNKLSNMKYNVSKNVSVHSYGY 121
           P + +   GC+  I     S+ KY +S  +  HS+G+
Sbjct: 169 PYMMETRCGCEAHIVVKLGSDKKYRISSMIGEHSHGF 205


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,475,647
Number of Sequences: 37544
Number of extensions: 79148
Number of successful extensions: 161
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)