Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_K06
(307 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24641| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 8e-06
SB_53796| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 6e-05
SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 6e-05
SB_4642| Best HMM Match : Kunitz_BPTI (HMM E-Value=6.2e-28) 42 1e-04
SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 42 1e-04
SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 41 2e-04
SB_42994| Best HMM Match : NHL (HMM E-Value=8.4e-34) 40 5e-04
SB_21308| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 7e-04
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 7e-04
SB_59417| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.001
SB_21309| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.020
SB_44878| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.75
SB_22958| Best HMM Match : RasGAP_C (HMM E-Value=0.23) 27 3.0
SB_27769| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.0
SB_24508| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.0
SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.3
SB_52747| Best HMM Match : Semialdhyde_dh (HMM E-Value=6.5) 26 5.3
SB_50557| Best HMM Match : Kinesin (HMM E-Value=9.6e-24) 26 7.0
SB_24459| Best HMM Match : DNA_pol3_chi (HMM E-Value=1.2) 25 9.2
>SB_24641| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1120
Score = 45.6 bits (103), Expect = 8e-06
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = +2
Query: 119 YNISTKTCVLFYYAGCRGNSNRFNTQLECEETC 217
YN +++ C F Y GC+GNSN F ++ ECE+ C
Sbjct: 243 YNQTSRKCKQFVYGGCQGNSNNFESKAECEKKC 275
>SB_53796| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 487
Score = 42.7 bits (96), Expect = 6e-05
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +2
Query: 119 YNISTKTCVLFYYAGCRGNSNRFNTQLECEETC 217
YN C+ F Y GC GN N F+T+ EC+ C
Sbjct: 43 YNFKRHRCIRFIYGGCGGNPNNFDTKNECKSAC 75
>SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2101
Score = 42.7 bits (96), Expect = 6e-05
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +2
Query: 113 YGYNISTKTCVLFYYAGCRGNSNRFNTQLECEETC 217
Y +N ++ C F+Y+GC GN+NRF T +C+ C
Sbjct: 698 YFHNSTSGLCEKFHYSGCEGNANRFPTMRKCQRKC 732
Score = 38.3 bits (85), Expect = 0.001
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +2
Query: 119 YNISTKTCVLFYYAGCRGNSNRFNTQLECEETCN 220
Y++ + C +F Y GC+GN+N F ++ C + C+
Sbjct: 644 YDMRSSECKMFTYGGCQGNANNFESKAACLKKCS 677
Score = 33.9 bits (74), Expect = 0.026
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 104 VHSYGYNISTKTCVLFYYAGCRGNSNRFNTQLECEETC 217
VH + YN + + C F Y+G GN N F + C+ C
Sbjct: 219 VHFF-YNAAKRLCEPFVYSGMGGNKNNFKDKDACQRAC 255
>SB_4642| Best HMM Match : Kunitz_BPTI (HMM E-Value=6.2e-28)
Length = 65
Score = 41.9 bits (94), Expect = 1e-04
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +2
Query: 119 YNISTKTCVLFYYAGCRGNSNRFNTQLECEETCNV 223
+ I K C F Y GC GN NRF T+ EC+ C +
Sbjct: 30 FEIEKKECQEFIYGGCGGNENRFFTKRECQRICKL 64
>SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 4002
Score = 41.5 bits (93), Expect = 1e-04
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = +2
Query: 119 YNISTKTCVLFYYAGCRGNSNRFNTQLECEETC 217
YN C+ F Y GC GN NRF T+ CE C
Sbjct: 2072 YNKKKGRCIRFAYGGCGGNPNRFKTKKACERRC 2104
>SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 3804
Score = 40.7 bits (91), Expect = 2e-04
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +2
Query: 119 YNISTKTCVLFYYAGCRGNSNRFNTQLECEETC 217
YN T C F Y GC GN NRF ++ +C+ C
Sbjct: 2140 YNKRTGRCQTFNYGGCGGNGNRFRSRRQCQRRC 2172
>SB_42994| Best HMM Match : NHL (HMM E-Value=8.4e-34)
Length = 750
Score = 39.5 bits (88), Expect = 5e-04
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +2
Query: 119 YNISTKTCVLFYYAGCRGNSNRFNTQLECEETC 217
Y+ + C F Y GC GN+N+F+++ EC E C
Sbjct: 520 YSTADNACHEFLYGGCGGNANKFDSKSECLEVC 552
>SB_21308| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2641
Score = 39.1 bits (87), Expect = 7e-04
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 113 YGYNISTKTCVLFYYAGCRGNSNRFNTQLECEETC 217
+ +N T C Y GC GN N F+T EC+ TC
Sbjct: 2389 FSFNSQTGQCQQLAYNGCLGNLNNFDTAEECQNTC 2423
>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3261
Score = 39.1 bits (87), Expect = 7e-04
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +2
Query: 119 YNISTKTCVLFYYAGCRGNSNRFNTQLECEETCNVH*TD 235
Y+ + C F Y GC GN N F + +C ETC TD
Sbjct: 3174 YDTNRGKCAPFVYTGCGGNENNFMNEQKCLETCREKATD 3212
>SB_59417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1822
Score = 38.7 bits (86), Expect = 0.001
Identities = 18/42 (42%), Positives = 25/42 (59%)
Frame = +2
Query: 92 KNVSVHSYGYNISTKTCVLFYYAGCRGNSNRFNTQLECEETC 217
KN V Y ++ + C F Y+GC GN+NRF T+ +CE C
Sbjct: 223 KNFVVRWY-FDKAAGICKPFVYSGCGGNTNRFVTKRKCEAFC 263
>SB_21309| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1286
Score = 34.3 bits (75), Expect = 0.020
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 119 YNISTKTCVLFYYAGCRGNSNRFNTQLECEETC 217
Y+++++ C + GC GN N F+T C +TC
Sbjct: 586 YDVTSRQCKQTEFWGCNGNHNLFSTVDSCSKTC 618
>SB_44878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1338
Score = 29.1 bits (62), Expect = 0.75
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +2
Query: 101 SVHSYGYNISTKTCVLFYYAGCRGNSNRFNTQ 196
S+ + YN C F + GC N N F T+
Sbjct: 1246 SIERFYYNAKIGKCQSFVFGGCLPNGNNFKTR 1277
>SB_22958| Best HMM Match : RasGAP_C (HMM E-Value=0.23)
Length = 1178
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Frame = +2
Query: 77 KYNVSKNVSVHSYG---YNISTKTCVLFYYAGCRGN 175
+YN+SK++++ YG YNIS K+ + Y G + N
Sbjct: 597 QYNISKSITIFVYGGSQYNIS-KSITISVYGGPQYN 631
>SB_27769| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 460
Score = 27.1 bits (57), Expect = 3.0
Identities = 13/43 (30%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Frame = -1
Query: 274 IVLILYNNS*QIYISSVNVASFLTLKLGVETIGVT--SAAGVI 152
+ ++ N + +S+V+VA+ + + + VET+GV +AA V+
Sbjct: 376 VAAVIVNVDVAVVVSNVDVAAAIFVNVDVETVGVNVDAAAAVV 418
>SB_24508| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 332
Score = 26.6 bits (56), Expect = 4.0
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 26 FDSGCQITINNNKLSNMKYNVSKNVSVHS 112
FD C+I I + ++ Y +SK + HS
Sbjct: 18 FDEECKIEIEKENIRSLGYRISKEPNNHS 46
>SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2835
Score = 26.2 bits (55), Expect = 5.3
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 80 YNVSKNVSVHSYGYNISTKTCVL 148
YN+SK +++HSY Y + VL
Sbjct: 670 YNISKWMNIHSYRYQLDGNYTVL 692
>SB_52747| Best HMM Match : Semialdhyde_dh (HMM E-Value=6.5)
Length = 144
Score = 26.2 bits (55), Expect = 5.3
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -1
Query: 196 LGVETIGVTSAAGVIEQYACFR*DIISVTVNRDVFTN 86
+G IG+T+A ++E+ C R IIS + + D T+
Sbjct: 11 VGCGCIGITAALSILERDPCVRVTIISDSFSPDNTTD 47
>SB_50557| Best HMM Match : Kinesin (HMM E-Value=9.6e-24)
Length = 547
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 95 NVSVHSYGYNISTKTCVLF 151
NV SYG + S KTCV+F
Sbjct: 71 NVCAFSYGASNSGKTCVMF 89
>SB_24459| Best HMM Match : DNA_pol3_chi (HMM E-Value=1.2)
Length = 297
Score = 25.4 bits (53), Expect = 9.2
Identities = 7/25 (28%), Positives = 18/25 (72%)
Frame = +3
Query: 96 TSLFTVTDIISQRKHAYCSITPAAE 170
TSL ++ +++ +++H+ CS+ P +
Sbjct: 27 TSLSSILNLLEEQRHSACSLLPGQQ 51
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,016,326
Number of Sequences: 59808
Number of extensions: 112441
Number of successful extensions: 304
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 377252670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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