Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_K06
         (307 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    23   1.1  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   1.1  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   3.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   3.4  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    20   6.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    20   6.0  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             20   6.0  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    20   7.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    20   7.9  

>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 50  INNNKLSNMKYNVSKNVSVHSYGYNISTKTCVLFYY 157
           I+NN   +  YN + N + ++  YN + K   L YY
Sbjct: 82  ISNNNSLSNNYNYNNNYNNYNNNYNTNYKK--LQYY 115


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 53  NNNKLSNMKYNVSKNVSVHSYGYNI 127
           NNN  +N  YN + N +     YNI
Sbjct: 334 NNNNYNNNNYNNNYNNNCKKLYYNI 358


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 53  NNNKLSNMKYNVSKNVSVHSYGYNIS 130
           NNN  +N  YN +   +     YNI+
Sbjct: 97  NNNNYNNYNYNNNNYNNYKKLYYNIN 122


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -3

Query: 167 CSRRNRTIRMFSLRYYIRNCEQRR 96
           C RR+R +   + + Y  +CE  R
Sbjct: 110 CPRRHRPVCASNGKIYANHCELHR 133


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = +2

Query: 47  TINNNKLSNMKYNVSKNVSVHSYGYNISTKTCVL 148
           TI+NN      YN   N + ++Y   +  K  ++
Sbjct: 89  TIHNNNNYKYNYNNKYNYNNNNYNKKLYYKNYII 122


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 7/28 (25%), Positives = 15/28 (53%)
 Frame = +3

Query: 117 DIISQRKHAYCSITPAAEVTPIVSTPNL 200
           D ISQ    +C++    +   + +TP++
Sbjct: 155 DSISQANEGFCAVISMHDGLVLYTTPSI 182


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 7/28 (25%), Positives = 15/28 (53%)
 Frame = +3

Query: 117 DIISQRKHAYCSITPAAEVTPIVSTPNL 200
           D ISQ    +C++    +   + +TP++
Sbjct: 150 DSISQANEGFCAVISMHDGLVLYTTPSI 177


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 116 GYNISTKTCVLFYYAGCRGNSNRFNTQ 196
           G  +S KT  L+Y A    N N  NT+
Sbjct: 252 GMALSHKTQNLYYSAMSSHNLNYVNTK 278


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +3

Query: 96  TSLFTVT---DIISQRKHAYCSITPAAEVTPIVSTPNLSVRKLA 218
           TS+ ++T   D+I+  K    + TPA + T I   P   V+  A
Sbjct: 864 TSINSITVEKDVINDVKTQITTNTPAKKATNIGGKPVAVVKSSA 907


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,909
Number of Sequences: 438
Number of extensions: 1260
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6493812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)