Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_K06
         (307 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g26240.1 68416.m03274 DC1 domain-containing protein contains ...    27   2.5  
At5g05070.1 68418.m00538 zinc finger (DHHC type) family protein ...    26   5.7  
At3g26250.1 68416.m03275 DC1 domain-containing protein contains ...    26   5.7  
At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein si...    25   7.6  
At1g35630.1 68414.m04427 protease-associated zinc finger (C3HC4-...    25   7.6  

>At3g26240.1 68416.m03274 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 922

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +2

Query: 74  MKYNVSKNVSVHSYGYNISTKTCVLFYYAGCRGNSNRFNTQLECEETCNVH 226
           ++Y   K++   SYG   S  T   ++   C G  N       C+E C VH
Sbjct: 781 VRYKHDKHILPLSYGKKTSDMT---YWCEACEGKINPEEGFYRCDEYCCVH 828


>At5g05070.1 68418.m00538 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 339

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
 Frame = +2

Query: 14  MITKFDSGCQITIN----NNKLSNMKYNVSKNVSVHSYGYNISTKTC 142
           MI + DS   +T +    NNK  N+K   +K+V V+  GY I  K C
Sbjct: 129 MILEDDSDSSLTQSMEWVNNKTPNLKIPRTKDVFVN--GYTIKVKFC 173


>At3g26250.1 68416.m03275 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 490

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +2

Query: 74  MKYNVSKNVSVHSYGYNISTKTCVLFYYAGCRGNSNRFNTQLECEETCNVH 226
           ++Y   K++    YG   S+ T   ++   C G  N      +C+E C VH
Sbjct: 347 VRYKHDKHILPLFYGKKTSSMT---YWCEACEGKINPEEGFYKCDEYCCVH 394


>At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein
           similar to chitinase/lysozyme GI:467689 from [Nicotiana
           tabacum]
          Length = 379

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +3

Query: 99  SLFTVTDIISQR-KHAYCSITPAAEVTPIVSTPNLSVRKLATFTELI 236
           S F VTDI S    H +C+       T  V+  + +  K +TFT+ +
Sbjct: 37  SEFPVTDIDSSLFTHLFCAFADLNSQTNQVTVSSANQPKFSTFTQTV 83


>At1g35630.1 68414.m04427 protease-associated zinc finger
           (C3HC4-type RING finger) family protein contains Pfam
           domain, PF02225: protease-associated (PA) domain and
           Pfam domain, PF00097: Zinc finger, C3HC4 type (RING
           finger); similar to ReMembR-H2 protein JR702
           [Arabidopsis thaliana] gi|6942149|gb|AAF32326
          Length = 318

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 153 ITPAAEVTPIVSTPNLSVRKLATFTEL 233
           + PA+E TP++S    S+  L +F +L
Sbjct: 284 VPPASETTPLISPSPNSITSLQSFYDL 310


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,729,466
Number of Sequences: 28952
Number of extensions: 71690
Number of successful extensions: 198
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 311361520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)