Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_K05
         (528 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0212 + 13842142-13842634,13842727-13843319                       29   2.3  
01_03_0209 - 13820980-13821572,13821665-13822157                       29   2.3  
01_06_0723 + 31501900-31502808,31502846-31503295                       28   4.0  

>01_03_0212 + 13842142-13842634,13842727-13843319
          Length = 361

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 93  NKYGDMLHHEFVQAMNGFNKTTKHN 167
           N++GD+   EFVQ   GFN +  H+
Sbjct: 107 NRFGDLTSTEFVQQFTGFNASGFHS 131


>01_03_0209 - 13820980-13821572,13821665-13822157
          Length = 361

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 93  NKYGDMLHHEFVQAMNGFNKTTKHN 167
           N++GD+   EFVQ   GFN +  H+
Sbjct: 107 NRFGDLTSTEFVQQFTGFNASGFHS 131


>01_06_0723 + 31501900-31502808,31502846-31503295
          Length = 452

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 96  CSASLTYIILSTRGSSPWRPAADMGTNR 13
           C  S T +    +GSSPW  A ++GT +
Sbjct: 392 CEKSCTLLFTLGKGSSPWTFALNLGTKK 419


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,189,800
Number of Sequences: 37544
Number of extensions: 108366
Number of successful extensions: 209
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)