Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_K05
         (528 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    24   1.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.6  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 105 DMLHHEFVQAMNGFNKTTKHNKGL 176
           D   H+ +   NG + TT HN+ L
Sbjct: 395 DSARHQRIGGCNGLHTTTAHNRFL 418


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 171 PCCVWWFC*SRSSPA 127
           PCC W  C + ++PA
Sbjct: 487 PCCWWKICWTITTPA 501



 Score = 21.0 bits (42), Expect = 7.8
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 114 ATCLRTCSASLTYIIL 67
           ATC+ +C  ++ YII+
Sbjct: 103 ATCVLSCWTNIYYIII 118


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 171 PCCVWWFC*SRSSPA 127
           PCC W  C + ++PA
Sbjct: 540 PCCWWKICWTITTPA 554



 Score = 21.0 bits (42), Expect = 7.8
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 114 ATCLRTCSASLTYIIL 67
           ATC+ +C  ++ YII+
Sbjct: 156 ATCVLSCWTNIYYIII 171


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,537
Number of Sequences: 438
Number of extensions: 1431
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)