Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_K03
         (599 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)             166   1e-41
SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)             148   3e-36
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)              135   3e-32
SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)             131   4e-31
SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)         63   1e-10
SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)              60   2e-09
SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)         59   2e-09
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)         56   2e-08
SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05)          53   2e-07
SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)         48   4e-06
SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.004
SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.033
SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)         33   0.23 
SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11)            31   0.54 
SB_41921| Best HMM Match : 7tm_1 (HMM E-Value=2e-39)                   27   8.8  
SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score =  166 bits (404), Expect = 1e-41
 Identities = 80/146 (54%), Positives = 95/146 (65%)
 Frame = +2

Query: 161 VLGILLFVAVAQSEDSPKGPKVTHKVTFHMKIGDEAVGNIVIGLFGKTVPKTVDNFYQLA 340
           V   L+FVA   + D+     VT KV   + IG +  G +++GLFG T PKTV NF  LA
Sbjct: 4   VAAFLVFVAFVNA-DTETTASVTKKVWMDVSIGGQPAGRVILGLFGDTAPKTVANFVALA 62

Query: 341 QKPEGEGYKGSKFHRVIDNFMIQXXXXXXXXXXXXRSIYGERFNDENFKLRHYGAGWLSM 520
            K +G GYK S FHRVI NFMIQ             SIYG+ F+DENF L+HYG GWL M
Sbjct: 63  DKEQGFGYKDSIFHRVIKNFMIQGGDFTNKDGTGGYSIYGKYFDDENFNLKHYGPGWLCM 122

Query: 521 ANAGKDTNGSQFFITTVKTPWLDGRH 598
           ANAGK+TNGSQF+ITT+KT WLDG H
Sbjct: 123 ANAGKNTNGSQFYITTIKTSWLDGSH 148


>SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score =  148 bits (359), Expect = 3e-36
 Identities = 87/170 (51%), Positives = 100/170 (58%), Gaps = 18/170 (10%)
 Frame = +2

Query: 143 MAAFATVLGILLFVAVAQSEDSPKGPKVTHKVTFHMKIGDEAVGNIVIGLF--------- 295
           MAAFA    I LF   + +    K P VT KV F + IG E  G I IGLF         
Sbjct: 1   MAAFAIFSVISLFFLASSAA---KDPIVTKKVFFDITIGGEKAGRIEIGLFVIIKTYYLL 57

Query: 296 -GKTVPKTV-------DNFYQLA-QKPEGEGYKGSKFHRVIDNFMIQXXXXXXXXXXXXR 448
             + V   +       D +Y    +  +G GYK S FHRVI +FMIQ            +
Sbjct: 58  ATRLVESLIGTNFRYFDTYYCCTIESQKGFGYKNSIFHRVIQDFMIQGGDFTKGDGTGGK 117

Query: 449 SIYGERFNDENFKLRHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRH 598
           SIYG++F DENFKL+HYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRH
Sbjct: 118 SIYGQKFADENFKLQHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRH 167


>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
          Length = 298

 Score =  135 bits (326), Expect = 3e-32
 Identities = 64/126 (50%), Positives = 80/126 (63%)
 Frame = +2

Query: 221 KVTHKVTFHMKIGDEAVGNIVIGLFGKTVPKTVDNFYQLAQKPEGEGYKGSKFHRVIDNF 400
           +V  +V F + IG+ + G IV+ L    VP T +NF  L    +G GYKGS FHR+I  F
Sbjct: 134 RVNPRVFFDITIGERSAGRIVMELRSDVVPMTAENFRCLCTHEKGFGYKGSSFHRIIPQF 193

Query: 401 MIQXXXXXXXXXXXXRSIYGERFNDENFKLRHYGAGWLSMANAGKDTNGSQFFITTVKTP 580
           M Q            +SIYG +F DENF L+H GAG LSMAN+G +TNGSQFF+TT KT 
Sbjct: 194 MCQGGDFTKHNGTGGKSIYGAKFEDENFVLKHTGAGVLSMANSGPNTNGSQFFLTTEKTD 253

Query: 581 WLDGRH 598
           WLDG+H
Sbjct: 254 WLDGKH 259


>SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 235

 Score =  131 bits (317), Expect = 4e-31
 Identities = 66/127 (51%), Positives = 77/127 (60%)
 Frame = +2

Query: 218 PKVTHKVTFHMKIGDEAVGNIVIGLFGKTVPKTVDNFYQLAQKPEGEGYKGSKFHRVIDN 397
           PK T+   F ++IG    G IV+ L    VPKT +NF  L    +G GYKGS FHRVI  
Sbjct: 2   PKTTY---FDIEIGGAPAGRIVMELRDDVVPKTAENFRALCTGEKGFGYKGSSFHRVIPG 58

Query: 398 FMIQXXXXXXXXXXXXRSIYGERFNDENFKLRHYGAGWLSMANAGKDTNGSQFFITTVKT 577
           FM Q            +SIYG +F DENF L+H G G LSMANAG  TNGSQFF+ T KT
Sbjct: 59  FMCQGGDFTRGDGTGGKSIYGAKFADENFNLKHTGPGILSMANAGPGTNGSQFFLCTAKT 118

Query: 578 PWLDGRH 598
            WLDG+H
Sbjct: 119 SWLDGKH 125


>SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)
          Length = 99

 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 31/51 (60%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
 Frame = +2

Query: 449 SIYGERFNDENFK-LRHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRH 598
           SI+G  F DE  + LRH     +SMANAG +TNGSQFFIT V TPWLD +H
Sbjct: 8   SIWGGEFEDEFHRNLRHDRPYTVSMANAGPNTNGSQFFITVVPTPWLDNKH 58


>SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 76

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 25/27 (92%), Positives = 26/27 (96%)
 Frame = +2

Query: 518 MANAGKDTNGSQFFITTVKTPWLDGRH 598
           MANAGKDTNGSQFFITTVKT WLDG+H
Sbjct: 1   MANAGKDTNGSQFFITTVKTSWLDGKH 27


>SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)
          Length = 145

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 24/50 (48%), Positives = 33/50 (66%)
 Frame = +2

Query: 449 SIYGERFNDENFKLRHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRH 598
           S+YG  F DE+F + H   G + MAN G+ TNGSQF+IT    PW+D ++
Sbjct: 51  SVYGPLFEDEDFSVAHNRRGVVGMANKGRHTNGSQFYITLQPAPWMDTKY 100


>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
          Length = 741

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 26/35 (74%), Positives = 28/35 (80%)
 Frame = +2

Query: 494 HYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRH 598
           H   G LSMAN+G +TNGSQFFITTV TP LDGRH
Sbjct: 189 HDKPGLLSMANSGPNTNGSQFFITTVPTPHLDGRH 223


>SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05)
          Length = 49

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 22/29 (75%), Positives = 24/29 (82%)
 Frame = +2

Query: 512 LSMANAGKDTNGSQFFITTVKTPWLDGRH 598
           LSMANAG  TNGSQFF+ T KT WLDG+H
Sbjct: 3   LSMANAGPGTNGSQFFLCTAKTSWLDGKH 31


>SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)
          Length = 378

 Score = 48.4 bits (110), Expect = 4e-06
 Identities = 24/41 (58%), Positives = 27/41 (65%)
 Frame = +2

Query: 449 SIYGERFNDENFKLRHYGAGWLSMANAGKDTNGSQFFITTV 571
           SIYG  F DE F+ +H     LSMAN G +TNGSQFFI  V
Sbjct: 31  SIYGGTFGDECFEFKHERPMLLSMANRGPNTNGSQFFIIHV 71


>SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1651

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 18/38 (47%), Positives = 24/38 (63%)
 Frame = +2

Query: 485 KLRHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRH 598
           +  H   G +SMAN G ++NGSQFFI   K P LD ++
Sbjct: 298 RCNHNARGTVSMANNGPNSNGSQFFICYGKQPHLDMKY 335


>SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 35.5 bits (78), Expect = 0.033
 Identities = 34/109 (31%), Positives = 45/109 (41%), Gaps = 1/109 (0%)
 Frame = +2

Query: 266 AVGNIVIGLFGKTVPKTVDNFYQLAQKPEGEGYKGSKFHRVIDNFMIQXXXXXXXXXXXX 445
           ++G I I L     P +  NF  LA    G  Y G++FHRVI  FM+Q            
Sbjct: 31  SLGEIEIELDADKAPISTANF--LAYVDSGY-YAGTQFHRVIPGFMVQGGGFDADMQQKD 87

Query: 446 RSIYGERFNDENFKLRHYGAGWLSMANAG-KDTNGSQFFITTVKTPWLD 589
                +   D      H   G L+MA    +D+  SQFFI      +LD
Sbjct: 88  TQAPIKNEADNGL---HNVRGTLAMARTQVRDSATSQFFINHKDNAFLD 133


>SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)
          Length = 454

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 19/42 (45%), Positives = 25/42 (59%)
 Frame = +2

Query: 266 AVGNIVIGLFGKTVPKTVDNFYQLAQKPEGEGYKGSKFHRVI 391
           +VG+I I L+GK  PK   NF QL    EG  Y  + FHR++
Sbjct: 11  SVGDIDIELWGKETPKACRNFIQLCL--EGY-YDNTIFHRIV 49


>SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11)
          Length = 48

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
 Frame = +2

Query: 272 GNIVIGLFGKTVPKTVDNFYQLAQKPEGEG--------YKGSKFHR 385
           G ++  LF   VPKT +NF  L    +G G        YKG  FHR
Sbjct: 2   GRVLFELFADKVPKTAENFRALCTGEKGIGPSTGKPLHYKGCPFHR 47


>SB_41921| Best HMM Match : 7tm_1 (HMM E-Value=2e-39)
          Length = 335

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 19/84 (22%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
 Frame = +3

Query: 300 RLFRRL*TTSISW-HRNQRERATREANSIG*LTTS*YRAEILPRVMALVVGAFMENVSMM 476
           RL R L TT++S   + + ++  + A ++G + T+ +  E+LP  +  +VG F +   + 
Sbjct: 202 RLIRELPTTTMSHDQKTKLQKERKTAITLG-IITALFFFELLPTYIIALVGEFCQPCFVK 260

Query: 477 KTLSSAIMVLDGYQWLMLAKTQMD 548
               +   V +  +WL  + + ++
Sbjct: 261 LGWQNITRVFNFAKWLQYSNSAVN 284


>SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2839

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 200  EDSPKGPKVTHKVTFHMKIGDEAVGNIVIGLFGKTVPKTVDNFYQ 334
            E    G +   +  +  +I D+AVG + +GLF +T  +  D   Q
Sbjct: 1694 EPEVNGMEPAEEEIYERRIRDKAVGKLDLGLFARTENEDTDQVNQ 1738


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,403,594
Number of Sequences: 59808
Number of extensions: 330092
Number of successful extensions: 702
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)