Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_K02
(460 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 30 0.15
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 26 2.4
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 26 3.2
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 3.2
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 4.2
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe... 25 7.3
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 25 7.3
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces... 24 9.7
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 24 9.7
SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease Pac1|S... 24 9.7
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 24 9.7
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 24 9.7
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 30.3 bits (65), Expect = 0.15
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 85 NSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPI 192
N V DG + VVI P F+ P+N S N+ P+
Sbjct: 402 NHSVTGDGEAKQVVITMPSTHFT-PANNSSANHSPL 436
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 26.2 bits (55), Expect = 2.4
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +1
Query: 118 HVVIANPDPFFSQPSNGPSGNY-EPISTGPAF-VDFNHPNYPPKRYDNP 258
HV ++NPD P + S NY P+ A +F+ P + +Y +P
Sbjct: 478 HVSLSNPDFAIGSPMSQDSSNYSSPLHRRKASDSNFSDPRFDDLKYLSP 526
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 25.8 bits (54), Expect = 3.2
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Frame = +1
Query: 145 FFSQPSNGP----SGNYEPISTGPAFVDF 219
F + P+N P SG+Y PI P F F
Sbjct: 1560 FVTPPTNSPYAEVSGDYNPIHVSPTFAAF 1588
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 25.8 bits (54), Expect = 3.2
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +1
Query: 175 GNYEPI--STGPAFVDFNHPNYPPKRYDNPLAR 267
G+Y P ST P + +P+YPP Y AR
Sbjct: 117 GSYPPTQPSTQPLPQSYGYPSYPPAGYRGGSAR 149
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 4.2
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = +1
Query: 151 SQPSNGPSGNYEPISTGPAFVDFNHPNYPP 240
S P N P P+S PA + P PP
Sbjct: 265 SSPPNSPPRPIAPVSMNPAINSTSKPPLPP 294
>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 659
Score = 24.6 bits (51), Expect = 7.3
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = -1
Query: 109 CRPMEHHYCPPRELCLRQP 53
C P H+C LCL+ P
Sbjct: 25 CSPQTSHWCKYPALCLKSP 43
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 24.6 bits (51), Expect = 7.3
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = -1
Query: 295 YLYETFTSHHGREGCRIAWVDNWD 224
Y+Y++ + R WV+NWD
Sbjct: 55 YIYKSNPGMEIKNAIRNGWVENWD 78
>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 24.2 bits (50), Expect = 9.7
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +1
Query: 145 FFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRY 249
+ +Q GPS NY + V+ +PNY + Y
Sbjct: 151 YIAQLVGGPSINYSTAAMLLGAVNIGNPNYEVQNY 185
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 24.2 bits (50), Expect = 9.7
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +1
Query: 100 SDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAF 210
SD DH V + P F S+ P + E S P F
Sbjct: 1443 SDVEDDHDVAKSTAPDFETSSHRPERSSEKKSPSPVF 1479
>SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease
Pac1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 24.2 bits (50), Expect = 9.7
Identities = 9/34 (26%), Positives = 14/34 (41%)
Frame = +1
Query: 139 DPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPP 240
+P +PS+ P + P +F YPP
Sbjct: 99 EPVIEEPSSHPKNQKNQENNEPTSEEFEEGEYPP 132
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 24.2 bits (50), Expect = 9.7
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -3
Query: 140 SGFAITTWSLLPSDGTPLL 84
S F + W++LP G P+L
Sbjct: 899 SCFVLRIWNMLPETGVPIL 917
>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 624
Score = 24.2 bits (50), Expect = 9.7
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +3
Query: 120 RCYCEPGSFLLSTIKRS*RKL*THKHWTGVRR 215
+C EP S STI+ HW G+R+
Sbjct: 444 KCLTEPTSRFQSTIEIQKHPFFKRLHWNGLRK 475
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,710,945
Number of Sequences: 5004
Number of extensions: 31551
Number of successful extensions: 82
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -