Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_J24
         (578 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0922 + 20834195-20836603                                         31   0.88 
08_01_0663 + 5721902-5723176,5724162-5724233,5724405-5724560,572...    29   2.0  
12_02_0244 - 16241243-16241279,16241781-16241848,16241930-162420...    29   3.5  
08_01_0004 + 39265-39440,39545-39652,41955-43528,43650-43996,440...    29   3.5  
01_06_0996 + 33667663-33667900,33668019-33668091,33668785-336688...    29   3.5  
02_05_0359 - 28269236-28269541,28270857-28270919,28271439-282714...    28   4.7  
07_01_0476 - 3593555-3594253,3594684-3594850,3594866-3594964,359...    28   6.2  
03_02_0798 - 11321590-11321685,11321802-11321888,11321972-113220...    28   6.2  
07_01_0646 + 4853546-4853623,4853732-4855357,4855467-4855751,485...    27   8.2  
01_01_1208 + 9733010-9733114,9733920-9733979,9735254-9736280,973...    27   8.2  

>04_03_0922 + 20834195-20836603
          Length = 802

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +3

Query: 423 QPRFQCQSIRH*KPAKYSSSSELQHCRCRSGLHVQGP-DW 539
           QP+ QC       P    + +EL  C+C  G  ++ P DW
Sbjct: 290 QPKVQCDVFAVCGPFTICNDNELGFCKCMKGFSIKSPKDW 329


>08_01_0663 +
           5721902-5723176,5724162-5724233,5724405-5724560,
           5724655-5724844,5725173-5725255
          Length = 591

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 528 LEHVVHSGTDSVEVRNLRNIWQVFSGECFGTEIVVVVME 412
           LE + HSG  + +V  L N W ++    F  + VV+V E
Sbjct: 417 LELLAHSGEVNKQVPRLSNFWNMYFTHHFQVDTVVMVRE 455


>12_02_0244 -
           16241243-16241279,16241781-16241848,16241930-16242032,
           16242095-16242256,16242305-16242369,16242547-16242612,
           16242738-16242829,16243029-16243134,16243231-16243279,
           16243387-16243540,16243661-16243687,16243797-16243959,
           16244621-16244701
          Length = 390

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = -3

Query: 552 LARCTNLVLEHVVHSGTDSVEVRN--LRNIWQVFSGECF 442
           L R  NLV+++V HSG + +++    LRN+   FS  CF
Sbjct: 352 LPRLQNLVMQNVDHSGGEFIDLLQGLLRNMLFGFSRICF 390


>08_01_0004 + 39265-39440,39545-39652,41955-43528,43650-43996,
            44090-44322,45308-45412,45531-45705,46443-46658
          Length = 977

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +1

Query: 61   LVGVNSRYVLVEEPGYYIEQYEDQPEQWANSRVRRQAGALTVNSDGTSGAMVKV 222
            L G+ SR V    P + ++ Y D+ EQW   R R  +  L ++ + + G+  +V
Sbjct: 886  LTGLGSRIV---SPVFGLQSYSDKGEQWFQLR-RPDSKQLQIDGESSKGSRAEV 935


>01_06_0996 +
           33667663-33667900,33668019-33668091,33668785-33668841,
           33668970-33669067,33669482-33669637,33669744-33670366,
           33670484-33670560,33671551-33671805,33671950-33672067,
           33672174-33672345,33672434-33672975
          Length = 802

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +2

Query: 59  FWSASTA-GTCSLKSLVTTLNNMRISRSSGPT 151
           FW  ST    CS   L+  LNN  +SR +GP+
Sbjct: 40  FWPRSTKWALCSEVDLIGPLNNWTLSRLTGPS 71


>02_05_0359 -
           28269236-28269541,28270857-28270919,28271439-28271459,
           28271660-28271716,28271789-28271874,28271982-28272039,
           28272176-28272311,28272799-28273073,28273564-28273602,
           28274052-28274143,28274422-28274454,28275041-28275088,
           28275191-28275323
          Length = 448

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 166 AGAPWSWPTAPADPHIVQCSNQALQRARTG 77
           AG PW+W  +PA   + +C   A +R  TG
Sbjct: 408 AGGPWTWRESPASRAMQKC--PACKRTHTG 435


>07_01_0476 -
           3593555-3594253,3594684-3594850,3594866-3594964,
           3595620-3595806,3595880-3595948,3596551-3596752,
           3597124-3597362,3598374-3598637
          Length = 641

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 150 LQGAPASGCTNCQLRRHLRCYGQGTYN 230
           L G P  G  N  +  +LRCYG  +Y+
Sbjct: 302 LNGVPGCGFLNHAINLYLRCYGSLSYH 328


>03_02_0798 -
           11321590-11321685,11321802-11321888,11321972-11322082,
           11322169-11322515,11322570-11322612,11322669-11322749,
           11323321-11323596,11325277-11325552
          Length = 438

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 172 PLAGAPWSWPTAPADPHIVQCSNQALQR 89
           PL+GAP   P AP  P  + C   AL +
Sbjct: 15  PLSGAPRRRPAAPTRPSALVCGTYALTK 42


>07_01_0646 +
           4853546-4853623,4853732-4855357,4855467-4855751,
           4856131-4856277
          Length = 711

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +1

Query: 169 AGALTVNSDGTSGAMVKVPITGNENHRLSALGSVDLTNQMKLGAATAGLAYDNVNGHG 342
           AG  + +     G  V   + G +NH +S +G          GA TAG AY+ +N  G
Sbjct: 178 AGHSSTSISAALGMAVARDLLGKKNHVISVIGD---------GAMTAGQAYEAMNNSG 226


>01_01_1208 +
           9733010-9733114,9733920-9733979,9735254-9736280,
           9736332-9736621
          Length = 493

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = -1

Query: 335 PFTLS*ANPAVAAPNFIWLVRSTEPRALSL*FSF-PVIGTLTIAPEVPSELTVSAPACRR 159
           P TL   +PA AA + IW     +P    +  SF P +     APE P  L  +  A  R
Sbjct: 426 PKTLRIDDPAEAAKSSIWATLGIKPDDKGIFKSFQPNVAKNGTAPESPQALQANPAAFSR 485

Query: 158 T 156
           +
Sbjct: 486 S 486


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.131    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,994,209
Number of Sequences: 37544
Number of extensions: 368333
Number of successful extensions: 968
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)