Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_J20
(225 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p... 27 0.25
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 27 0.33
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 0.58
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos... 26 0.77
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar... 26 0.77
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||... 25 1.0
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p... 25 1.3
SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces pomb... 25 1.8
SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|... 24 2.4
SPCC417.05c |chr2|cfh2|chitin synthase regulatory factor |Schizo... 24 3.1
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 23 4.1
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po... 23 5.4
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom... 23 5.4
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual 23 5.4
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|... 23 7.2
SPCC1753.03c |rec7||meiotic recombination protein Rec7 |Schizosa... 23 7.2
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c... 23 7.2
SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual 23 7.2
SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi... 22 9.5
>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 27.5 bits (58), Expect = 0.25
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 1 ASSTSSDEVEEKKP-SKGKSRQKVKDRLSLDQNKYGKNKKKQFNQFIVEEGQGNAEKLQK 177
ASS + + + K P ++ SR K +++ + ++ K K + I AEK +K
Sbjct: 181 ASSNNKNHNQSKNPQNRSNSRSKQRNKNAPPKSAPSKRKSNILDDPI------EAEKARK 234
Query: 178 RAERFAGGA 204
RAERF A
Sbjct: 235 RAERFGVAA 243
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 27.1 bits (57), Expect = 0.33
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Frame = +1
Query: 22 EVEEKKPSKGKSRQKVKDR-LSLDQNKY---GKNKKKQFNQFIVEEGQGNAEKLQKRAER 189
++ E+KP K S VK + +Q Y K ++++ N+ EE + EKL+++ ER
Sbjct: 29 DISEEKPQKELSDASVKSSYVDQEQQAYENWKKQEQEEINRKKEEELKSKFEKLRQKNER 88
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.2 bits (55), Expect = 0.58
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 8 PHLVMKLRKKNPLKVNHVRKLKTGYHWT 91
PH V+KL + P+ R++K YH T
Sbjct: 117 PHAVLKLLENMPMPWEEYREVKVLYHVT 144
>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
Plc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 899
Score = 25.8 bits (54), Expect = 0.77
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = -3
Query: 184 QLSFEVFQHFLALLQ 140
+LSFE FQHF++LL+
Sbjct: 349 KLSFEEFQHFVSLLK 363
>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 0.77
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +1
Query: 67 VKDRLSLDQNKYGKNKKKQFNQFIVEEGQGNAEKLQKRAER 189
++++LSL +N ++ K EEG N EK +K+ ++
Sbjct: 14 LQEKLSLKENDVVEDDGKVEENDAAEEGASNGEKKKKKKKK 54
>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 1.0
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +1
Query: 7 STSSDEVEEKKPSKGKSRQKVKDRLSLDQNKYGKNKKKQFNQFIVEEGQG 156
S+ SD+ E+K+PSK + + +S+ K + K+ N+ E+ G
Sbjct: 280 SSDSDDDEKKQPSKSEKTSSMS--VSIKPPKIIRKGSKEQNRIAKEKASG 327
>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 608
Score = 25.0 bits (52), Expect = 1.3
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +1
Query: 31 EKKPSKGKSRQKVKDRLSLDQNKYGKNKKKQFNQFIVEEGQ 153
++KP + RQ +++ SL +N +N+K + EE +
Sbjct: 36 KEKPQNSRKRQLAEEKKSLFENSDSENEKDLIDADEFEEAE 76
>SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 436
Score = 24.6 bits (51), Expect = 1.8
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -2
Query: 140 TIN*LNCFFLFLPYLFWS 87
+I+ LNCFFL +LF+S
Sbjct: 3 SISFLNCFFLVFLFLFFS 20
>SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 260
Score = 24.2 bits (50), Expect = 2.4
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +1
Query: 7 STSSDEVEEKKPSKGKSRQKVKDRLSLDQNKYGKNKKK 120
S S VE+K ++ K + VK + + ++N Y +KK+
Sbjct: 15 SAKSGRVEKKHSNEKKYLKSVKGKNNENENSYIVDKKR 52
>SPCC417.05c |chr2|cfh2|chitin synthase regulatory factor
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 512
Score = 23.8 bits (49), Expect = 3.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 28 EEKKPSKGKSRQKVKDRLSLDQNKYGKNKK 117
EE+K +S K K RLS+ K KN++
Sbjct: 478 EERKSRNSESLPKKKKRLSMLSFKRSKNRE 507
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 23.4 bits (48), Expect = 4.1
Identities = 15/56 (26%), Positives = 31/56 (55%)
Frame = +1
Query: 22 EVEEKKPSKGKSRQKVKDRLSLDQNKYGKNKKKQFNQFIVEEGQGNAEKLQKRAER 189
E+ EKK + + RQ++KD + + + +KK+ + + E Q + E Q+R ++
Sbjct: 116 ELLEKKRIEAE-RQRLKDEEERRKKELMEKEKKEKERIRLIEEQKHKENEQRRLKQ 170
>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 562
Score = 23.0 bits (47), Expect = 5.4
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -3
Query: 190 IFQLSFEVFQHFLAL 146
IF+ FEVF HFL +
Sbjct: 24 IFEAIFEVFLHFLKI 38
>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 23.0 bits (47), Expect = 5.4
Identities = 11/40 (27%), Positives = 18/40 (45%)
Frame = +1
Query: 85 LDQNKYGKNKKKQFNQFIVEEGQGNAEKLQKRAERFAGGA 204
++ K K NQF + + +K +KR RF G+
Sbjct: 73 IEDKKRKVEKPVSGNQFSLLSEEDEVDKKEKRRRRFENGS 112
>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 684
Score = 23.0 bits (47), Expect = 5.4
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 37 KPSKGKSRQKVKDRLS 84
KPSK KS++K KD+ S
Sbjct: 33 KPSKFKSKRKEKDKNS 48
>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1064
Score = 22.6 bits (46), Expect = 7.2
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +1
Query: 22 EVEEKKPSKGKSRQKVKDRLSLDQNKYGKNKKKQFNQFIVEEGQG 156
E+ E+ K QK + ++ +G+ K ++ VEEG G
Sbjct: 270 EILERFQGKALDGQKYEPLFPYFKSTFGERAFKLYSADYVEEGSG 314
>SPCC1753.03c |rec7||meiotic recombination protein Rec7
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 339
Score = 22.6 bits (46), Expect = 7.2
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 28 EEKKPSKGKSRQKVKDRLSLDQNKYGKNKKKQFN 129
E+K+ + +S+ LSL N Y K+ +Q N
Sbjct: 126 EKKQFNNSQSQSNNSQELSLMNNAYNKSSAQQPN 159
>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 589
Score = 22.6 bits (46), Expect = 7.2
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 7 STSSDEVEEKKPSKGKS 57
S++ DEV E KP+K K+
Sbjct: 30 SSTVDEVNELKPAKSKA 46
>SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 413
Score = 22.6 bits (46), Expect = 7.2
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -2
Query: 113 LFLPYLFWSSDN 78
LF+ L+WSSDN
Sbjct: 402 LFMHELYWSSDN 413
>SPAC688.06c |slx4||structure-specific endonuclease subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 419
Score = 22.2 bits (45), Expect = 9.5
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +1
Query: 4 SSTSSDEVEEKKPSKGKSRQKVKDRLSLDQNKYGKNKKKQ 123
S ++ DE++++ PS G S S + +KKK+
Sbjct: 202 SVSTVDEIQQRHPSAGHSIDSTCQSNSFLEGDSATHKKKK 241
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.304 0.122 0.320
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 740,761
Number of Sequences: 5004
Number of extensions: 11164
Number of successful extensions: 29
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 54
effective length of database: 2,092,262
effective search space used: 41845240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)
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