Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_J19
         (231 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces pomb...    91   1e-20
SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces ...    83   4e-18
SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core ...    25   1.0  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   1.8  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    24   2.3  
SPBC23G7.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    24   2.3  
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual           23   5.4  
SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces ...    23   5.4  
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma...    23   5.4  
SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subu...    23   7.2  
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    22   9.5  
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    22   9.5  

>SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 91.5 bits (217), Expect = 1e-20
 Identities = 39/68 (57%), Positives = 52/68 (76%)
 Frame = +1

Query: 28  RLHMARSRNDQSATDTKLWMLASLPSLHKALRELIEVLVVRAKNEIDIIFPGFSHLQRAQ 207
           +LH  RSRNDQ  TD +LW+   L  + K+L  L++V V RA++++DII PG++HLQRAQ
Sbjct: 106 KLHTGRSRNDQVTTDMRLWLRDELDIIQKSLVGLLQVFVARAESDLDIIMPGYTHLQRAQ 165

Query: 208 PIRWSHFL 231
           PIRWSHFL
Sbjct: 166 PIRWSHFL 173


>SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 461

 Score = 83.4 bits (197), Expect = 4e-18
 Identities = 36/73 (49%), Positives = 50/73 (68%)
 Frame = +1

Query: 13  GEPALRLHMARSRNDQSATDTKLWMLASLPSLHKALRELIEVLVVRAKNEIDIIFPGFSH 192
           G+ A +LH  RSRNDQ  TD +LW+   +  +   +  L++V   RA+ EID+I  G++H
Sbjct: 102 GDVAGKLHTGRSRNDQVTTDLRLWLCRKIKEVEVYVINLLKVFTNRAEMEIDVIMSGYTH 161

Query: 193 LQRAQPIRWSHFL 231
           LQRAQP+RWSHFL
Sbjct: 162 LQRAQPVRWSHFL 174


>SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core
           protein Qcr2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 182 PGKIISISFLARTTKTSINSLSALCRLGN 96
           P K+  +SF  R T T+  SLS +   G+
Sbjct: 25  PKKVEGVSFAGRETPTATGSLSVVINAGS 53


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 177  ENNINFIFSTYH*NFDQFSKCF 112
            ++NIN+  + Y  NF  FS CF
Sbjct: 1491 QDNINYASNRYSFNFFLFSVCF 1512


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 58   QSATDTKLWMLASLPSLHKALRELIEVLVVR 150
            ++  +T++WML ++    KA  ELI+ L  R
Sbjct: 1472 KNTEETEVWMLTTMVEALKAFIELIKNLFER 1502


>SPBC23G7.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 131

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +1

Query: 46  SRNDQSATDTKLWMLASLPSLHKALRELIEVLVVRAKNEIDIIFPGFSHLQR 201
           S+ D+   ++  W L     L + +RE+ E L  R KN+ + +      L R
Sbjct: 2   SKEDEEVLESYFWTLQESIPLRRRIREIRE-LQERNKNKYEQLLQARKDLDR 52


>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 604

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 61  SATDTKLWMLASLPSLHKALRELIEVLVVRAKNEIDIIFP 180
           S     L  L ++ S   +L ELIEVL+   +  I  + P
Sbjct: 422 STAKAHLTRLKTIVSTDASLVELIEVLIFNEELRIQTLLP 461


>SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 407

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 124 ELIEVLVVRAKNEIDIIFPGFSH 192
           E+ E ++  AK    I+FPG SH
Sbjct: 236 EVEENMLEAAKEFAGIVFPGISH 258


>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 835

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 106 DWVTTPASIVLCL*PIDRCD 47
           DW +TPA+I  CL   D  D
Sbjct: 491 DWGSTPAAIDSCLSVCDEYD 510


>SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subunit
           5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 228

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -2

Query: 131 INSLSALCRLGNDASIHSFVSVAD*SLRLLAMCR 30
           + ++ AL   G  A++H F++    S  +LAM +
Sbjct: 73  VGTMGALTAAGAQATVHDFLASWSASADVLAMSK 106


>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
            subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 27   SSTHGEKSQRSIGYRHKTM 83
            +S HG+K    + YRH+ M
Sbjct: 970  ASRHGQKGTIGMTYRHEDM 988


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 170 LFSRDFHTCN 199
           +F R FHTCN
Sbjct: 260 VFRRSFHTCN 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 996,989
Number of Sequences: 5004
Number of extensions: 16468
Number of successful extensions: 43
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 56
effective length of database: 2,082,254
effective search space used: 41645080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)