Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_J19
(231 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0735 + 10811326-10812342,10813199-10813555,10813962-108142... 73 2e-14
01_06_0746 - 31636024-31641396 29 0.53
03_02_0207 - 6411324-6412895 27 2.8
02_05_1257 + 35286153-35286599,35286679-35287229,35287608-352878... 26 3.7
01_01_0086 - 644732-645433 26 3.7
12_01_0649 - 5497844-5499727 26 4.9
08_01_0128 + 1033331-1033660 26 4.9
07_03_1693 - 28756331-28756435,28756558-28756664,28757114-287572... 25 6.5
07_03_0100 + 13389899-13390219,13390723-13390841,13391220-133913... 25 6.5
06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,376... 25 6.5
05_05_0323 - 24098962-24099866,24099941-24100442 25 6.5
03_06_0572 + 34812203-34812278,34812485-34813768,34813973-348140... 25 6.5
02_02_0600 + 12018256-12018502,12018943-12019073,12019104-12019553 25 6.5
07_03_0327 + 16817149-16817438,16818029-16818224,16818309-168196... 25 8.6
>03_02_0735 +
10811326-10812342,10813199-10813555,10813962-10814225,
10814894-10815010,10815796-10815944,10816315-10816606,
10816681-10816845,10817106-10817357
Length = 870
Score = 73.3 bits (172), Expect = 2e-14
Identities = 33/73 (45%), Positives = 47/73 (64%)
Frame = +1
Query: 13 GEPALRLHMARSRNDQSATDTKLWMLASLPSLHKALRELIEVLVVRAKNEIDIIFPGFSH 192
GEPA +LH ARSRNDQ TD +LW ++ + +++ LV+ A +D+I PG++H
Sbjct: 507 GEPAKKLHTARSRNDQIVTDLRLWCRDAIDKILFRIKQFQVSLVLLASKYVDLIVPGYTH 566
Query: 193 LQRAQPIRWSHFL 231
LQRAQP+ H L
Sbjct: 567 LQRAQPVLLPHLL 579
>01_06_0746 - 31636024-31641396
Length = 1790
Score = 29.1 bits (62), Expect = 0.53
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +1
Query: 73 TKLWMLASLPSLHKALRELIEVLVVRAKNEIDII 174
T+ + L LP +HK + L+E L+++ K++I I+
Sbjct: 779 TEEYRLTLLPQIHKYVISLVEQLLLKDKDQIKIV 812
>03_02_0207 - 6411324-6412895
Length = 523
Score = 26.6 bits (56), Expect = 2.8
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +1
Query: 37 MARSRNDQSATDTKLWMLASLPSLHKALRELIEVLVVRA-KNEIDIIFPGFSHLQRAQPI 213
+A SA W+L+S P + + +RE EV VRA + + D+ GF L + +
Sbjct: 318 LAGRETTSSALTWFFWLLSSRPDVERRIRE--EVATVRARRGDGDVDRVGFD-LDELREM 374
Query: 214 RWSH 225
++ H
Sbjct: 375 QYVH 378
>02_05_1257 +
35286153-35286599,35286679-35287229,35287608-35287872,
35288267-35288359,35288469-35288555,35288658-35288750
Length = 511
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 127 LIEVLVVRAKNEIDIIFPGFSHLQRA 204
L VL++ +N +IF G HLQ+A
Sbjct: 384 LAMVLILATRNHFAVIFTGDRHLQKA 409
>01_01_0086 - 644732-645433
Length = 233
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 26 FVYTWREVATINRLQTQNYGCWRRYPVYTK 115
FV +W A N T + +RR+PV+ K
Sbjct: 48 FVLSWLGPAHFNPAVTITFAAYRRFPVWPK 77
>12_01_0649 - 5497844-5499727
Length = 627
Score = 25.8 bits (54), Expect = 4.9
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 73 TKLWMLASLPSLHKALRELIEVLVVRAKNEIDIIFPGFS 189
T+L +A+LP L E + L V KNEI ++F F+
Sbjct: 320 TRLNSVATLPGLITGCEEHLMSLFVIEKNEILLLFNHFA 358
>08_01_0128 + 1033331-1033660
Length = 109
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 28 RLHMARSRNDQSATDTKLWMLASLPSLHKAL 120
R+H+ARSR+ S+ T A +P H A+
Sbjct: 11 RMHLARSRSSSSSAATAAAAAADVPRGHFAV 41
>07_03_1693 -
28756331-28756435,28756558-28756664,28757114-28757245,
28757412-28757478,28757553-28757635,28757824-28757905,
28763101-28763177,28763278-28763361,28763443-28763512,
28763625-28763713,28763801-28764487,28765700-28765997
Length = 626
Score = 25.4 bits (53), Expect = 6.5
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 32 YTWREVATINRLQTQNYGCWR 94
YT E + + R Q N GCW+
Sbjct: 458 YTHCEASGVGRCQINNGGCWK 478
>07_03_0100 +
13389899-13390219,13390723-13390841,13391220-13391315,
13391481-13391553,13392055-13392123
Length = 225
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 101 GNDASIHSFVSVAD*SLRLLAMCRRRAGSPA 9
G S+H+ V R++ CRRR GSP+
Sbjct: 44 GPPQSLHASSRVPAARHRIVCPCRRRGGSPS 74
>06_01_0520 +
3761990-3762327,3763304-3763589,3763746-3763820,
3764013-3764961,3766967-3767064,3768144-3768284,
3768758-3768874,3768924-3769013,3769014-3771818
Length = 1632
Score = 25.4 bits (53), Expect = 6.5
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +3
Query: 18 TCSSSTHGEKS 50
TCSSSTHGE++
Sbjct: 757 TCSSSTHGERA 767
>05_05_0323 - 24098962-24099866,24099941-24100442
Length = 468
Score = 25.4 bits (53), Expect = 6.5
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +1
Query: 154 KNEIDIIFPGFSHLQRAQPIRWSHF 228
KN +D+I +SH ++AQ + ++ F
Sbjct: 194 KNMVDLILEAYSHARKAQCVIFTSF 218
>03_06_0572 +
34812203-34812278,34812485-34813768,34813973-34814049,
34814299-34814646
Length = 594
Score = 25.4 bits (53), Expect = 6.5
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -2
Query: 149 RTTKTSINSLSALCRLGNDASIHSFVSVAD*SLRLLAMCRRR 24
R T S+ + A+ LG + +S+ SLR +A CRRR
Sbjct: 103 RCTLESVQAELAVAGLGRSVKVSPELSLP--SLRAMAKCRRR 142
>02_02_0600 + 12018256-12018502,12018943-12019073,12019104-12019553
Length = 275
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -3
Query: 100 VTTPASIVLCL*PIDRCDFSPCV 32
VTTP+S+ +C PI R +F+P +
Sbjct: 56 VTTPSSVSICAFPIVR-EFAPLI 77
>07_03_0327 +
16817149-16817438,16818029-16818224,16818309-16819642,
16819925-16820097,16820257-16820503,16820599-16820893,
16820934-16820982,16821357-16821562
Length = 929
Score = 25.0 bits (52), Expect = 8.6
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +1
Query: 25 LRLHMARSRNDQSATDTKLWMLASLPS--LHKALRELIEVLV 144
++LH ++ TD +LW LPS L K +R+++ +V
Sbjct: 573 IQLHSVPPFSNTKGTDIELWRQDGLPSAQLLKLMRDVVAGIV 614
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,431,202
Number of Sequences: 37544
Number of extensions: 102984
Number of successful extensions: 270
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 14,793,348
effective HSP length: 55
effective length of database: 12,728,428
effective search space used: 267296988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -