Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_J19
         (231 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30824| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.0  
SB_48856| Best HMM Match : PQ-loop (HMM E-Value=9.4e-08)               27   3.2  
SB_43319| Best HMM Match : Laminin_A (HMM E-Value=0.0086)              27   3.2  
SB_13053| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.3  
SB_39121| Best HMM Match : Band_41 (HMM E-Value=1.7e-08)               25   9.6  
SB_31550| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.6  
SB_17501| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.6  
SB_12367| Best HMM Match : Bowman-Birk_leg (HMM E-Value=0.054)         25   9.6  
SB_15410| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.6  

>SB_30824| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 239

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 13  GEPALRLHMARSRNDQSATDTKL 81
           G  A +LH  RSRNDQ+  D +L
Sbjct: 74  GSVAGKLHTGRSRNDQAQVDARL 96


>SB_48856| Best HMM Match : PQ-loop (HMM E-Value=9.4e-08)
          Length = 235

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 67  TDTKLWMLASLPSLHKALRE 126
           TD  LW    LP +HK  RE
Sbjct: 26  TDATLWCFVLLPQIHKNFRE 45


>SB_43319| Best HMM Match : Laminin_A (HMM E-Value=0.0086)
          Length = 375

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/44 (25%), Positives = 26/44 (59%)
 Frame = +1

Query: 31  LHMARSRNDQSATDTKLWMLASLPSLHKALRELIEVLVVRAKNE 162
           L + R + +++  D  LW++  +PS ++  RE+++V+     +E
Sbjct: 114 LDLKRIQLNKTIEDNALWVVEQIPSFYR--REIVDVMETTVDHE 155


>SB_13053| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 581

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 52 CDFSPCVDEEQVPLH 8
          CD   CVD+E++P H
Sbjct: 33 CDVLLCVDDEEIPSH 47


>SB_39121| Best HMM Match : Band_41 (HMM E-Value=1.7e-08)
          Length = 558

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 17  NLLFVYTWREVATI 58
           NLLF +TWRE+  +
Sbjct: 493 NLLFEFTWREIPVV 506


>SB_31550| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 153

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +1

Query: 130 IEVLVVRAKNEIDIIFPGFSHLQRAQPIRW 219
           +++LV   +NE+     G  ++  + P RW
Sbjct: 64  LDILVTNTRNEVIFPLTGVRYMDVSDPARW 93


>SB_17501| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 819

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 161 KLILFSRDFHTCNVLSQFVGV 223
           KL+LFS D+ + N+L +   V
Sbjct: 54  KLLLFSHDYSSANILERLTSV 74


>SB_12367| Best HMM Match : Bowman-Birk_leg (HMM E-Value=0.054)
          Length = 414

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 145 PLKLRSIL*VLCVDWVTTP 89
           P K R++   +CVDWV TP
Sbjct: 158 PYKGRTVHKHVCVDWVDTP 176


>SB_15410| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1147

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 91  PASIVLCL*PIDRCDFSPCVD 29
           P  + +C+  ID CD +PC D
Sbjct: 166 PMMMEICI-DIDECDHNPCAD 185


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,572,937
Number of Sequences: 59808
Number of extensions: 125762
Number of successful extensions: 354
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 16,821,457
effective HSP length: 54
effective length of database: 13,591,825
effective search space used: 299020150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)