Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_J18
         (334 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0785 - 24563310-24565004,24565302-24565384,24565484-245660...    27   4.9  
10_08_0073 + 14657400-14657696,14658168-14658229,14658241-14658886     26   6.4  
03_01_0577 + 4261249-4262055,4262149-4262203,4262293-4262468,426...    26   6.4  
02_04_0453 + 23053621-23054167,23054867-23054958,23055085-230551...    26   6.4  
08_02_0709 - 20256705-20257133                                         26   8.5  
05_05_0185 + 23064249-23064448,23064881-23064950,23065082-230651...    26   8.5  
04_04_1017 - 30144844-30144855,30145163-30145228,30145383-301454...    26   8.5  
04_04_1010 - 30084141-30084152,30084460-30084525,30084680-300847...    26   8.5  

>06_03_0785 -
           24563310-24565004,24565302-24565384,24565484-24566039,
           24566397-24566513,24566565-24567131,24568632-24568702,
           24569833-24569903,24570270-24570441,24571229-24572212,
           24573128-24574808
          Length = 1998

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 9/31 (29%), Positives = 21/31 (67%)
 Frame = +1

Query: 49  LLILNMNFTKIILLVVACVFAMGTVSAAPWE 141
           + I+  ++T+++ +VVAC+F    +S+  +E
Sbjct: 891 IYIIYRSYTRLVRVVVACLFCCHVISSFQYE 921


>10_08_0073 + 14657400-14657696,14658168-14658229,14658241-14658886
          Length = 334

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 135 RRRRNGPHSEDASDNQQN 82
           RRRR  PH ED  D  +N
Sbjct: 120 RRRRRDPHREDDGDRHRN 137


>03_01_0577 +
           4261249-4262055,4262149-4262203,4262293-4262468,
           4262554-4262718,4262811-4263178,4263225-4263861,
           4263952-4265844,4266325-4266672
          Length = 1482

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 79  IILLVVACVFAMGTVSAAPWESF 147
           I+LLV+ CV AM    + PW S+
Sbjct: 224 IVLLVLGCVGAMINGGSLPWYSY 246


>02_04_0453 +
           23053621-23054167,23054867-23054958,23055085-23055149,
           23058558-23059086
          Length = 410

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/19 (63%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = +2

Query: 98  LASSLWGPFR-RRRGNPSR 151
           L+SSLWGP + RRRG   R
Sbjct: 322 LSSSLWGPHKARRRGGGGR 340


>08_02_0709 - 20256705-20257133
          Length = 142

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +1

Query: 166 GPRMREASHKCWSSRRYSGPGHGFG 240
           G   R   H+C   RR  GPG G G
Sbjct: 98  GAAHRHLLHRCSQRRRRRGPGAGHG 122


>05_05_0185 +
           23064249-23064448,23064881-23064950,23065082-23065120,
           23065639-23066067,23067322-23067627
          Length = 347

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +3

Query: 135 VGILLGIGKSWAENERSQS*VLVQ 206
           VGI++GIG S A NE S + ++V+
Sbjct: 267 VGIMIGIGISSAYNENSPTALIVE 290


>04_04_1017 -
           30144844-30144855,30145163-30145228,30145383-30145431,
           30145594-30145661,30145764-30145809,30146114-30146207,
           30146290-30146352,30146532-30146654,30146761-30146794,
           30147050-30147175,30147328-30147384
          Length = 245

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
 Frame = +3

Query: 213 LQWPRPRLWLKENNHSLTFLCIFSCLYYHI-FCII 314
           L W RP       N + +F   F C   HI FCII
Sbjct: 155 LIWYRPLYRAMRTNSAFSFGWFFLCYLIHIGFCII 189


>04_04_1010 -
           30084141-30084152,30084460-30084525,30084680-30084728,
           30084891-30084958,30085061-30085106,30085411-30085504,
           30085587-30085649,30085829-30085951,30086058-30086091,
           30086347-30086472,30086625-30086681
          Length = 245

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
 Frame = +3

Query: 213 LQWPRPRLWLKENNHSLTFLCIFSCLYYHI-FCII 314
           L W RP       N + +F   F C   HI FCII
Sbjct: 155 LIWYRPLYRAMRTNSAFSFGWFFLCYLIHIGFCII 189


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,430,666
Number of Sequences: 37544
Number of extensions: 163223
Number of successful extensions: 437
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)