Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_J18
         (334 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6223| Best HMM Match : Ras (HMM E-Value=0)                          30   0.54 
SB_43069| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.8  
SB_5158| Best HMM Match : PH (HMM E-Value=0.28)                        27   3.8  
SB_24571| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_40727| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.8  
SB_12504| Best HMM Match : NAD_kinase (HMM E-Value=0)                  26   8.8  
SB_1442| Best HMM Match : SRCR (HMM E-Value=0)                         26   8.8  

>SB_6223| Best HMM Match : Ras (HMM E-Value=0)
          Length = 1665

 Score = 29.9 bits (64), Expect = 0.54
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +2

Query: 74   LKLFCWLS-LASSLWGPFRR--RRGNPSRNWKKLGR 172
            L  F W+S +A   W  F R  RR N   NWK++GR
Sbjct: 1114 LSSFTWMSVIAFDTWRAFSRKTRRHNNVINWKRVGR 1149


>SB_43069| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 386

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 15/26 (57%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = +2

Query: 74  LKLFCWLSLAS--SLWGPFRRRRGNP 145
           L   C L +AS  SLWG  RRRR NP
Sbjct: 9   LVTICLLLIASAHSLWGRRRRRRCNP 34


>SB_5158| Best HMM Match : PH (HMM E-Value=0.28)
          Length = 502

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = -2

Query: 171 RPNFFQFLEGFPRRRR---NGPHSEDASDNQQNNFSEIHV 61
           RPNFF+ L GF  R R   +   ++D + +   +F  +H+
Sbjct: 298 RPNFFRSLSGFSLRDRSHLDRDTNKDKNKHANESFGGVHI 337


>SB_24571| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 868

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 178 REASHKCWSSRRYSGPGHGFG*RKIIIH*LF 270
           R A+   W+S+ Y   GHG     +++H +F
Sbjct: 838 RRATDPWWTSKAYPKEGHGARTASVVLHGVF 868


>SB_40727| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1393

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 137 HGAAETVPIAKTQATT 90
           H A +T+PI KT ATT
Sbjct: 665 HPAVQTIPIIKTSATT 680


>SB_12504| Best HMM Match : NAD_kinase (HMM E-Value=0)
          Length = 295

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 51  INIKHEFH*NYFVGCRLRLRYGDRFGG 131
           + + H    NY+  CR +L +G R GG
Sbjct: 267 LRLIHPLDHNYYEVCRNKLGWGSRLGG 293


>SB_1442| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 2103

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = +3

Query: 87  VGCR-LRLRYGDRFGGAVGILLGIGKSWAENER 182
           V CR L  RY   FG   G + G G  W +N R
Sbjct: 499 VVCRMLGYRYARTFGSVGGSIPGSGTIWMDNVR 531


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,737,743
Number of Sequences: 59808
Number of extensions: 171057
Number of successful extensions: 493
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 475580678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)