Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_J18
         (334 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g34315.1 68415.m04200 disease resistance protein-related simi...    29   1.0  
At5g11820.1 68418.m01380 expressed protein self-incompatibility ...    28   1.8  
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit...    26   5.5  
At5g60610.1 68418.m07606 F-box family protein contains F-box dom...    26   7.2  
At1g55325.1 68414.m06320 expressed protein                             26   7.2  
At1g23020.1 68414.m02876 ferric-chelate reductase, putative simi...    26   7.2  
At5g64830.1 68418.m08156 programmed cell death 2 C-terminal doma...    25   9.5  
At3g63500.2 68416.m07153 expressed protein                             25   9.5  
At3g57510.1 68416.m06402 endo-polygalacturonase (ADPG1) identica...    25   9.5  
At1g61710.1 68414.m06960 DC1 domain-containing protein contains ...    25   9.5  
At1g01590.1 68414.m00076 ferric-chelate reductase, putative simi...    25   9.5  
At1g01580.1 68414.m00075 ferric-chelate reductase, putative simi...    25   9.5  

>At2g34315.1 68415.m04200 disease resistance protein-related similar
           to SP|P54120 AIG1 protein {Arabidopsis thaliana}
          Length = 246

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 252 NHSLTFLCIFSCLYYHIFCIIYT 320
           NH L   C+F C  +  FCI  T
Sbjct: 222 NHHLLLFCVFYCFCFFYFCIFPT 244


>At5g11820.1 68418.m01380 expressed protein self-incompatibility
           protein S3 precursor, Papaver rhoeas cv., PIR:S69186
          Length = 175

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 20/51 (39%), Positives = 25/51 (49%)
 Frame = +1

Query: 70  FTKIILLVVACVFAMGTVSAAPWESF*ELEKVGPRMREASHKCWSSRRYSG 222
           FT  +L+  AC FA  T SAA +E   E+     R R  +  CWSS    G
Sbjct: 17  FTWCLLIASAC-FAY-TASAARFEVRNEISIYPGRNRSLAINCWSSNNKLG 65


>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
           putative similar to U2 snRNP auxiliary factor, large
           subunit [Nicotiana plumbaginifolia] GI:3850823
          Length = 565

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 207 PSLQWPRPRLWLKENNHSLTFLCIFSCLYYHIFC 308
           P+L       +LKE      FL +FSCL + +FC
Sbjct: 525 PNLFITNGHYFLKEKTD--LFLSVFSCLVFEMFC 556


>At5g60610.1 68418.m07606 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 388

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -1

Query: 226 LGHCSDGWTSTYDWLLSFSAQL 161
           L  CSD WT    WLL  S  L
Sbjct: 295 LSICSDNWTKLVIWLLQNSPNL 316


>At1g55325.1 68414.m06320 expressed protein
          Length = 1921

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 220  HCSDGWTSTYDWLLS 176
            HC  GWT  + WL+S
Sbjct: 1539 HCCYGWTEDWRWLVS 1553


>At1g23020.1 68414.m02876 ferric-chelate reductase, putative similar
           to ferric-chelate reductase (FRO1) [Pisum sativum]
           GI:15341529; contains Pfam profile PF01794: Ferric
           reductase like transmembrane component
          Length = 693

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +2

Query: 275 YFLMFILSHFLYHIYLLFLI 334
           +F +F  +H+LY +++LF +
Sbjct: 275 FFEVFFYTHYLYMVFMLFFV 294


>At5g64830.1 68418.m08156 programmed cell death 2 C-terminal
           domain-containing protein low similarity to SP|P46718
           Programmed cell death protein 2 (Zinc finger protein
           Rp-8) {Mus musculus}; contains Pfam profile PF04194:
           Programmed cell death protein 2, C-terminal domain
          Length = 380

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 135 VGILLGIGKSWAENERSQS 191
           VGILLG+   WAE+E   S
Sbjct: 2   VGILLGLPGKWAEDELEPS 20


>At3g63500.2 68416.m07153 expressed protein
          Length = 1162

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 178 REASHKCWSSRRYSGPGHGFG 240
           R+AS   W  RR+ GPG+ FG
Sbjct: 99  RDASVSSW--RRFGGPGNDFG 117


>At3g57510.1 68416.m06402 endo-polygalacturonase (ADPG1) identical
           to endo-polygalacturonase [Arabidopsis thaliana]
           GI:2597824
          Length = 431

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 126 GGAVGILLGIGKSWAEN 176
           GG+ GI+ G GK+W +N
Sbjct: 162 GGSTGIINGNGKTWWQN 178


>At1g61710.1 68414.m06960 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 402

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = +3

Query: 240 LKENNHSLTFLCIFSCLYYHIFCII 314
           L++ N  + + C+  C  +HI C++
Sbjct: 350 LRDTNTKVFYWCVECCTIFHIECVL 374


>At1g01590.1 68414.m00076 ferric-chelate reductase, putative similar
           to ferric-chelate reductase (FRO1) [Pisum sativum]
           GI:15341529; contains Pfam profile: PF01794 ferric
           reductase like transmembrane component
          Length = 704

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 278 FLMFILSHFLYHIYLLFLI 334
           F +F  SH+LY +++LF +
Sbjct: 277 FEVFFYSHYLYIVFMLFFV 295


>At1g01580.1 68414.m00075 ferric-chelate reductase, putative similar
           to ferric-chelate reductase (FRO1) [Pisum sativum]
           GI:15341529; contains Pfam profile: PF01794 ferric
           reductase like transmembrane component
          Length = 725

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +2

Query: 275 YFLMFILSHFLYHIYLLFLI 334
           +F +F  +H+LY +++LF +
Sbjct: 285 FFEVFFYTHYLYIVFMLFFV 304


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,989,546
Number of Sequences: 28952
Number of extensions: 131567
Number of successful extensions: 298
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 390583752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)