Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_J16
(445 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 27 1.3
SPBC26H8.05c |||serine/threonine protein phosphatase |Schizosacc... 26 2.3
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 2.3
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce... 26 2.3
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 25 5.2
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 25 5.2
SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S... 25 5.2
SPAC1805.06c |hem2||porphobilinogen synthase Hem2 |Schizosacchar... 25 6.9
SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr... 25 6.9
SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosac... 25 6.9
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 24 9.1
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 27.1 bits (57), Expect = 1.3
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -3
Query: 365 PDILKSGSAGVGTGPGVSSGRSFLRPATTRGAGDCS 258
P ++ + SAG +GP VSS S++ ++G+G S
Sbjct: 32 PTVIATRSAGASSGPAVSSKPSYM---ASKGSGHLS 64
>SPBC26H8.05c |||serine/threonine protein phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 26.2 bits (55), Expect = 2.3
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +1
Query: 112 TSVFGFYIICVVLYNILRSWILCSE 186
T V+GFY CV Y W C E
Sbjct: 120 TQVYGFYDECVRKYGSANVWRYCCE 144
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.2 bits (55), Expect = 2.3
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 259 EQSPAPRVVAGLRKLRPELTPGPVPTPA 342
E P P+ G+ + P T PVPTP+
Sbjct: 1196 EAPPVPKPSVGVPPVPPPSTAPPVPTPS 1223
>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 568
Score = 26.2 bits (55), Expect = 2.3
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +3
Query: 48 REFINERYRRLNT-NLTFTLS*HICVWVLYYLCSIIQYFAKL 170
+EF + RRL L L C+W+LY+L +++ L
Sbjct: 64 QEFTSSELRRLQKLRLKMDLRIIPCLWILYFLSCCLRFTVSL 105
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 25.0 bits (52), Expect = 5.2
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -3
Query: 245 SPQHHTNQHYTTIYQIHH*NSLQRIQLRKILYNTTQII*NPNTDVSR 105
SP H TN+ +TT+ S+ +K Y Q++ + NTD R
Sbjct: 435 SPYHPTNEEFTTV-------SVDESAGKKHEYTLFQVVMSDNTDPQR 474
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 25.0 bits (52), Expect = 5.2
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 244 EMLVGEQSPAPRVVAGLRKLRPELTPGPVPTP 339
+ V P + A + K + ++TP P P P
Sbjct: 273 DQAVASSKPIKKAWASVAKSKKKVTPAPAPAP 304
>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
Spo6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 25.0 bits (52), Expect = 5.2
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -2
Query: 357 SKVRISRRRYWSRSQFRAEFP 295
+ +R+S+ RYW R +R FP
Sbjct: 110 TSIRVSKLRYWQR-DYRLAFP 129
>SPAC1805.06c |hem2||porphobilinogen synthase Hem2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 24.6 bits (51), Expect = 6.9
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +1
Query: 238 CGEMLVGEQSPAPRVVAGLRKLRPEL 315
CG M E P + V +R L PEL
Sbjct: 90 CGSMADSENGPVIKAVKEIRHLFPEL 115
>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
1|||Manual
Length = 581
Score = 24.6 bits (51), Expect = 6.9
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +3
Query: 114 ICVWVLYYLCSII 152
ICVWV Y +C I+
Sbjct: 93 ICVWVGYLICGIL 105
>SPAC1610.04 |mug99||meiotically upregulated gene
Mug99|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 24.6 bits (51), Expect = 6.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 69 YRRLNTNLTFTLS*HICVWVLYYLC 143
+++L TN+T T IC L YLC
Sbjct: 245 FQQLRTNMTPTSDLEICKRFLNYLC 269
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 24.2 bits (50), Expect = 9.1
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -3
Query: 314 SSGRSFLRPATTRGAGDCSPTSISPQHHTNQHYTTIYQI 198
S RS+ PA+T + S +S P+ H H+ Y +
Sbjct: 271 SVSRSYQSPASTPRSSVSSVSSSPPEDHPFFHWNVDYPV 309
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,791,117
Number of Sequences: 5004
Number of extensions: 34401
Number of successful extensions: 105
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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