Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_J16
(445 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1363 - 26022333-26023225,26023319-26023451 30 0.73
01_06_0700 - 31317825-31318253 29 1.3
06_01_0829 - 6254769-6254852,6254940-6255024,6255158-6255245,625... 29 1.7
04_04_1400 - 33259716-33260069,33260172-33260219,33260471-332605... 28 2.9
04_04_0939 - 29530242-29531087,29531406-29531597,29531690-295317... 28 3.9
09_06_0292 + 22075647-22075691,22077394-22077507,22077602-220778... 27 5.1
03_06_0306 + 33019798-33020025,33020163-33020258,33020357-330204... 27 5.1
01_06_0290 + 28235024-28235037,28235160-28235643 27 5.1
01_05_0354 - 21302497-21302964,21303780-21304151 27 5.1
12_02_1139 - 26402332-26402367,26402915-26402953,26403136-264032... 27 6.8
10_08_0236 + 16078162-16078731 27 6.8
06_03_0342 + 19737951-19738772 27 6.8
05_02_0152 + 7126802-7127315,7127451-7129190,7130718-7131778 27 6.8
03_05_0928 + 28888405-28889121 27 6.8
01_01_0292 - 2387653-2387711,2388061-2388684,2388814-2389104,238... 27 6.8
10_05_0008 + 7791462-7791611,7792378-7792833 27 9.0
10_02_0030 + 4350970-4351165,4351502-4351723,4351889-4352502 27 9.0
>07_03_1363 - 26022333-26023225,26023319-26023451
Length = 341
Score = 30.3 bits (65), Expect = 0.73
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 350 SGSAGVGTGPGVSSGRSFLRPATTRGAGDCSPTS 249
+G G TG S+G ++T GA CSP+S
Sbjct: 189 AGGGGATTGAAASAGADSPAASSTSGASQCSPSS 222
>01_06_0700 - 31317825-31318253
Length = 142
Score = 29.5 bits (63), Expect = 1.3
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = +1
Query: 271 APRVVAGLRKLRPELTPGPVPTPADPDFRISGVLRQYYNDD 393
A V + LRP + PV PA +G R YY DD
Sbjct: 29 AQPAVCPVAPLRPSSSSAPVRIPAPTTTTFAGARRGYYEDD 69
>06_01_0829 -
6254769-6254852,6254940-6255024,6255158-6255245,
6255344-6255407,6255496-6255576,6256709-6256781,
6256871-6257385,6258168-6258284
Length = 368
Score = 29.1 bits (62), Expect = 1.7
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = -3
Query: 335 VGTGPGVSSGRSFLRPATTRGAGDCSPTSISPQHHTNQHYTTI 207
+ GP SS R+FL + I P+H+ N Y T+
Sbjct: 63 IPNGPDTSSFRAFLMSFMSSSNSSSDSIEIIPEHNMNMEYPTL 105
>04_04_1400 -
33259716-33260069,33260172-33260219,33260471-33260596,
33260850-33260900,33260963-33261055,33261217-33261272,
33261465-33261522,33262306-33262365,33262513-33262623,
33263368-33263949,33264026-33264097
Length = 536
Score = 28.3 bits (60), Expect = 2.9
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +1
Query: 265 SPAPRVVAGLRKLRPELTPGPVPTPADP 348
+P P + L RP L P P P PA P
Sbjct: 69 APPPSLGLRLAARRPNLPPPPAPAPASP 96
>04_04_0939 -
29530242-29531087,29531406-29531597,29531690-29531770,
29532300-29532428,29532579-29532650,29532761-29532829,
29533809-29533891,29534101-29534203,29534289-29534402,
29536230-29536274
Length = 577
Score = 27.9 bits (59), Expect = 3.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 274 PRVVAGLRKLRPELTPGPVPTPADPD 351
PR+ ++ P L PG VP+ DPD
Sbjct: 290 PRIFIDQDEIIPHLQPGRVPSTVDPD 315
>09_06_0292 +
22075647-22075691,22077394-22077507,22077602-22077841,
22077926-22078003,22078094-22078162,22078420-22078545,
22079108-22079188,22079272-22079460,22079597-22080434,
22082290-22082411,22082482-22082701,22082910-22083055,
22083260-22083566,22083886-22084136,22084294-22084533,
22084930-22085238
Length = 1124
Score = 27.5 bits (58), Expect = 5.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 274 PRVVAGLRKLRPELTPGPVPTPADPD 351
PR+ ++ P L PG VP+ DPD
Sbjct: 308 PRIFIDQDEVIPHLDPGMVPSTVDPD 333
>03_06_0306 +
33019798-33020025,33020163-33020258,33020357-33020428,
33021274-33021339,33021699-33021764,33021852-33021926,
33023117-33023188,33024501-33024600,33024730-33024746,
33025558-33025650
Length = 294
Score = 27.5 bits (58), Expect = 5.1
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -1
Query: 424 QPPAPMPKIRRHR 386
QPPAP PK+RR R
Sbjct: 125 QPPAPRPKLRRER 137
>01_06_0290 + 28235024-28235037,28235160-28235643
Length = 165
Score = 27.5 bits (58), Expect = 5.1
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +2
Query: 215 CSVGWYDVVVRCLWGSNRRRRGW 283
C W V RCL G N +RGW
Sbjct: 22 CFFIWLAVKGRCLTGDNLAKRGW 44
>01_05_0354 - 21302497-21302964,21303780-21304151
Length = 279
Score = 27.5 bits (58), Expect = 5.1
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +1
Query: 391 DAESWAWVRAAVRGGCL 441
DA W+W+R R GCL
Sbjct: 132 DAVEWSWLRLHARAGCL 148
>12_02_1139 -
26402332-26402367,26402915-26402953,26403136-26403287,
26403496-26403997,26404260-26404373,26404509-26404736,
26405375-26405457,26405677-26405824,26406778-26406861
Length = 461
Score = 27.1 bits (57), Expect = 6.8
Identities = 14/61 (22%), Positives = 27/61 (44%)
Frame = -3
Query: 374 RKTPDILKSGSAGVGTGPGVSSGRSFLRPATTRGAGDCSPTSISPQHHTNQHYTTIYQIH 195
+K + +G+ G G G G ++GR+ ++ A S Q N TT+ ++
Sbjct: 378 KKRLSLPNNGTMGGGVGKGATNGRTNQSMSSKNAAKGSSKLESKQQQRPNPPNTTVKRVE 437
Query: 194 H 192
+
Sbjct: 438 Y 438
>10_08_0236 + 16078162-16078731
Length = 189
Score = 27.1 bits (57), Expect = 6.8
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -3
Query: 347 GSAGVGTGPGVSSGRSFLRPATTRGAG 267
G+AG G+G GVS G S AT G+G
Sbjct: 48 GAAGSGSGYGVSQGGSNGAHATAGGSG 74
>06_03_0342 + 19737951-19738772
Length = 273
Score = 27.1 bits (57), Expect = 6.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 357 NIRSFTTVLQR*RRILGMGAGGCARRLPA 443
++ F +L + G G GG ARRLPA
Sbjct: 159 HVAYFARILMLAVAVAGTGGGGAARRLPA 187
>05_02_0152 + 7126802-7127315,7127451-7129190,7130718-7131778
Length = 1104
Score = 27.1 bits (57), Expect = 6.8
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = -3
Query: 374 RKTPDILKSGSAGVGTGPGVSSGRSFLRPATTRGAGD 264
R PD +SGSA G G +S L PA G GD
Sbjct: 805 RWRPDGRRSGSAHTGCGSAFPGAKSSL-PAVRSGLGD 840
>03_05_0928 + 28888405-28889121
Length = 238
Score = 27.1 bits (57), Expect = 6.8
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +2
Query: 374 DSITTMTPNLGHGCGRLCAAAAC 442
D TP+ GH G LCAA C
Sbjct: 29 DGCCEYTPDDGHPAGLLCAACGC 51
>01_01_0292 -
2387653-2387711,2388061-2388684,2388814-2389104,
2389338-2389390,2390496-2390968,2391090-2391432,
2391793-2391911,2392081-2392512,2392657-2392747,
2392833-2392942,2393681-2393875,2394581-2394622,
2395144-2395268,2395856-2395926,2396047-2396147
Length = 1042
Score = 27.1 bits (57), Expect = 6.8
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 274 PRVVAGLRKLRPELTPGPVPTPADP 348
PR+ +G+R+ RP L+P + ADP
Sbjct: 640 PRLESGIRQFRPYLSPLKLVRAADP 664
>10_05_0008 + 7791462-7791611,7792378-7792833
Length = 201
Score = 26.6 bits (56), Expect = 9.0
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = -3
Query: 338 GVGTGPGVSSGRSFLRPATTRGAGDCSPTSISPQHHTNQHYT 213
GV T PG G+ LRP T G + + SP +H T
Sbjct: 94 GVQT-PGGGYGKGLLRPLTASGKEGAAGSRSSPPMKVKRHLT 134
>10_02_0030 + 4350970-4351165,4351502-4351723,4351889-4352502
Length = 343
Score = 26.6 bits (56), Expect = 9.0
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -3
Query: 290 PATTRGAGDCSPTSISPQHHTNQHYTTIYQIHH*NSLQ 177
PAT G +PT+I PQ +Y + + H L+
Sbjct: 22 PATILAIGTANPTNIVPQDEFTDYYFGVTKSEHLTELK 59
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,313,150
Number of Sequences: 37544
Number of extensions: 259830
Number of successful extensions: 1078
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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