Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_J16
(445 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45264| Best HMM Match : DUF1590 (HMM E-Value=2.8) 32 0.24
SB_58829| Best HMM Match : HC2 (HMM E-Value=5.8) 31 0.43
SB_44610| Best HMM Match : PI3Ka (HMM E-Value=6.1e-32) 29 1.3
SB_27990| Best HMM Match : DUF229 (HMM E-Value=6.5e-07) 29 1.7
SB_10283| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_15241| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_18084| Best HMM Match : DUF801 (HMM E-Value=0.37) 27 7.0
SB_19404| Best HMM Match : Pkinase (HMM E-Value=0.00019) 27 7.0
SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0) 27 9.2
SB_27771| Best HMM Match : SH2 (HMM E-Value=8.6e-16) 27 9.2
SB_9202| Best HMM Match : ig (HMM E-Value=5e-40) 27 9.2
SB_43395| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
>SB_45264| Best HMM Match : DUF1590 (HMM E-Value=2.8)
Length = 348
Score = 31.9 bits (69), Expect = 0.24
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Frame = -3
Query: 368 TPDILKSGSAGVG-TGPGVSSGRSFLRPATTRGAGDCSPTSISPQHHTNQ---HYTTIYQ 201
+P +L + S G GP S S + T+ G+ P S P HH H T+Y
Sbjct: 110 SPGLLSNPSVVFGHQGPPQGSSGSHVWARTSLGSRTKDPPSGGPPHHNGSPRAHPITVYD 169
Query: 200 IHH*NSLQR 174
HH ++ R
Sbjct: 170 THHRTTVLR 178
>SB_58829| Best HMM Match : HC2 (HMM E-Value=5.8)
Length = 959
Score = 31.1 bits (67), Expect = 0.43
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -3
Query: 263 CSPTSISPQHHTNQHYTTIYQIHH*NSLQRIQLRKILYN 147
C T + HH H T + Q+HH N Q L+++ +N
Sbjct: 798 CHTTLLKQAHHNKCHTTLLKQVHH-NQCQTTLLKQVHHN 835
Score = 28.7 bits (61), Expect = 2.3
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -3
Query: 263 CSPTSISPQHHTNQHYTTIYQIHH*NSLQRIQLRKILYN 147
C T + HH H + Q+HH N Q L+++ +N
Sbjct: 577 CHTTLLKQAHHNQCHTALLKQLHH-NQCQTTLLKQVHHN 614
Score = 28.3 bits (60), Expect = 3.0
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -3
Query: 263 CSPTSISPQHHTNQHYTTIYQIHH*NSLQRIQLRKILYN 147
C T + HH H T + Q+HH N LR+ +N
Sbjct: 603 CQTTLLKQVHHNQCHTTLLKQVHH-NQCHTTLLREADHN 640
Score = 27.9 bits (59), Expect = 4.0
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -3
Query: 263 CSPTSISPQHHTNQHYTTIYQIHH*NSLQRIQLRKILYNTTQ 138
C T + HH H T + Q HH N L+++ +N Q
Sbjct: 668 CHTTLLKQVHHNQCHTTLLKQAHH-NQCHTALLKQLHHNQCQ 708
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = -3
Query: 263 CSPTSISPQHHTNQHYTTIYQIHH*NSLQRIQLRKILYN 147
C T HH H T + Q+HH N LR+ +N
Sbjct: 707 CQTTLFKQVHHNQCHTTLLKQVHH-NQCHTTLLREADHN 744
Score = 27.1 bits (57), Expect = 7.0
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -3
Query: 263 CSPTSISPQHHTNQHYTTIYQIHH 192
C T + HH H T + Q+HH
Sbjct: 824 CQTTLLKQVHHNQCHTTLLKQVHH 847
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -3
Query: 263 CSPTSISPQHHTNQHYTTIYQIHH*NSLQRIQLRKILYN 147
C T + HH H T + Q+HH N L++ +N
Sbjct: 850 CHTTLLKQAHHNQCHTTLLKQLHH-NQCHTTLLKQAHHN 887
Score = 27.1 bits (57), Expect = 7.0
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -3
Query: 263 CSPTSISPQHHTNQHYTTIYQIHH 192
C T + HH H T + Q+HH
Sbjct: 876 CHTTLLKQAHHNQCHTTLLKQVHH 899
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = -3
Query: 263 CSPTSISPQHHTNQHYTTIYQIHH*NSLQRIQLRKILYN 147
C T + HH H + Q+HH N L+++ +N
Sbjct: 642 CHTTLLKQAHHNQCHTALLKQLHH-NQCHTTLLKQVHHN 679
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = -3
Query: 263 CSPTSISPQHHTNQHYTTIYQIHH*NSLQRIQLRKILYN 147
C T + HH H + Q+HH N L+++ +N
Sbjct: 746 CHTTLLKQAHHNQCHTALLKQLHH-NQCHTTLLKQVHHN 783
>SB_44610| Best HMM Match : PI3Ka (HMM E-Value=6.1e-32)
Length = 773
Score = 29.5 bits (63), Expect = 1.3
Identities = 14/23 (60%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +1
Query: 307 PELTP-GPVPTPADPDFRISGVL 372
PELT GP+P P DPD RI V+
Sbjct: 542 PELTRFGPLPLPLDPDVRIMEVV 564
>SB_27990| Best HMM Match : DUF229 (HMM E-Value=6.5e-07)
Length = 887
Score = 29.1 bits (62), Expect = 1.7
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = -1
Query: 163 AKYCIILHK*YKTQTQ--MCQDNVNVKF-VFKRRYRSLINSRETHI 35
AKYC + H+ YKT + C D ++ F VF+ +R S+ET +
Sbjct: 191 AKYCKLAHEAYKTHKKPLTCADRIDKSFCVFRDSWR---ESKETRV 233
>SB_10283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 29.1 bits (62), Expect = 1.7
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = -1
Query: 163 AKYCIILHK*YKTQTQ--MCQDNVNVKF-VFKRRYRSLINSRETHI 35
AKYC + H+ YKT + C D ++ F VF+ +R S+ET +
Sbjct: 4 AKYCKLAHEAYKTHKKPLTCADRIDKSFCVFRDSWR---ESKETRV 46
>SB_15241| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 68
Score = 28.7 bits (61), Expect = 2.3
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 62 RTISTFKYEFDVYVILTHLCLG-FILFV*YYTIFCEAGFFAV 184
RT+ +Y D + C G FILF+ YYTI E GF+ V
Sbjct: 19 RTVKLIRY-VDTFDHFVMACEGIFILFIIYYTIE-EGGFYRV 58
>SB_18084| Best HMM Match : DUF801 (HMM E-Value=0.37)
Length = 599
Score = 27.1 bits (57), Expect = 7.0
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 6 LSRVIEDELKICVSREFINERYRRLNTNLTFTLS*HICVWV 128
L + +ED+ K V R + + R+ T FTLS IC ++
Sbjct: 46 LKKQLEDDTKDIVFRYYSSLFLARVRTAQRFTLSPRICAYI 86
>SB_19404| Best HMM Match : Pkinase (HMM E-Value=0.00019)
Length = 372
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 234 SYQPTLHYNLSNSSLKFTAKNPASQ 160
SY P +H N + + T K PASQ
Sbjct: 40 SYSPEIHINDRENGVGLTTKRPASQ 64
>SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 921
Score = 26.6 bits (56), Expect = 9.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 356 EYQEFYDSITTMTPNLGHGCGRL 424
+Y + +D T M P+LG CG L
Sbjct: 132 DYVQVFDGDTVMAPSLGKFCGSL 154
>SB_27771| Best HMM Match : SH2 (HMM E-Value=8.6e-16)
Length = 896
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +1
Query: 262 QSPAPRVVAGLRKLRPELTPGPVPTPA 342
Q P P+ +RK P P P PTPA
Sbjct: 131 QHPTPQHSPPIRKQTPPSKPHPSPTPA 157
>SB_9202| Best HMM Match : ig (HMM E-Value=5e-40)
Length = 1604
Score = 26.6 bits (56), Expect = 9.2
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -3
Query: 353 KSGSAGVGTGPGVSSGRSFLRPATTRGAGDCSPTSISPQHHTNQHYTTIYQIHH 192
KS + G T VSS + ATT + CS + I+P + H + Q+++
Sbjct: 118 KSEADGTTTVSTVSSSNTTNVSATTTASPTCSISVITPIRTASCHMAVLLQLNY 171
>SB_43395| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1112
Score = 26.6 bits (56), Expect = 9.2
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 294 EETPP*TDSWTSTYAC*S*L*NIRSFT 374
E+ P +WT TY+C S NI SFT
Sbjct: 964 EQYLPCPHAWTRTYSCSSRTSNITSFT 990
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,588,986
Number of Sequences: 59808
Number of extensions: 262016
Number of successful extensions: 760
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -