Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_J16
         (445 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58749-1|AAK18877.1|  238|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z70212-5|CAA94165.3|  320|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z77662-5|CAB01192.2|  579|Caenorhabditis elegans Hypothetical pr...    27   6.1  
Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical pr...    27   6.1  

>U58749-1|AAK18877.1|  238|Caenorhabditis elegans Hypothetical
           protein B0496.6 protein.
          Length = 238

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +1

Query: 262 QSPAPRVVAGLRKLRPELTPGPVPTPADP---DFRISGVLRQYYNDD 393
           + P+P+        +   TP P+P P++P   D +++ V+ +YY ++
Sbjct: 162 EGPSPKCDVATDTTQITFTPSPLPIPSEPKSSDIKVT-VIEEYYKEE 207


>Z70212-5|CAA94165.3|  320|Caenorhabditis elegans Hypothetical
           protein R04D3.7 protein.
          Length = 320

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 90  LTFTLS*HICVWVLYYLCSIIQYFAKLD 173
           LTF +  HI V+V  Y+C+ I +  K +
Sbjct: 234 LTFQIFGHILVYVPIYICTFISFITKTE 261


>Z77662-5|CAB01192.2|  579|Caenorhabditis elegans Hypothetical
           protein F47B8.5 protein.
          Length = 579

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 307 PELTPGPVPTPADPDFRISG 366
           PE+ P P P PA P+   SG
Sbjct: 532 PEVAPAPAPAPAAPESDASG 551


>Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical protein
            F46C3.3 protein.
          Length = 2557

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 17/56 (30%), Positives = 22/56 (39%)
 Frame = +1

Query: 262  QSPAPRVVAGLRKLRPELTPGPVPTPADPDFRISGVLRQYYNDDAESWAWVRAAVR 429
            QSP P     +R   P   P P P P  P  R   V+R     D  +   +R + R
Sbjct: 1705 QSPVPSEPVVVRT--PSPVPQPTPPPPPPPVREEWVIRDSVERDPVTQGRIRGSFR 1758


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,105,650
Number of Sequences: 27780
Number of extensions: 207828
Number of successful extensions: 771
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)