Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_J16
         (445 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g16830.1 68418.m01972 syntaxin 21 (SYP21) / PEP12 homolog ide...    28   3.3  
At3g60230.1 68416.m06731 hypothetical protein                          28   3.3  
At2g25830.1 68415.m03099 YebC-related contains Pfam profile PF01...    27   5.7  
At4g01090.1 68417.m00147 extra-large G-protein-related contains ...    26   10.0 

>At5g16830.1 68418.m01972 syntaxin 21 (SYP21) / PEP12 homolog
           identical to Syntaxin homolog (PEP12 homolog)
           (SP:Q39233) and syntaxin of plants 21 (GP:899122)
           {Arabidopsis thaliana}; contains Pfam profiles
           PF05739:SNARE domain and PF00804:  Syntaxin
          Length = 279

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 244 EMLVGEQSPAPRVVAGLRKLRPELTPGPVPTPADPDFRISGVLRQYY 384
           ++  G +SPAP    G R+ RP     P    A   FRIS  +  ++
Sbjct: 5   DLEAGTRSPAPNRFTGGRQQRPSSRGDPSQEVAAGIFRISTAVNSFF 51


>At3g60230.1 68416.m06731 hypothetical protein 
          Length = 207

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 317 VSSGRSFLRPATTRGAGDCSPTSISPQHHTNQH 219
           +SS RSF +P   +G G     ++ P +H N H
Sbjct: 61  LSSNRSFKKPGNAQGGGQ-PRVNLPPVNHPNNH 92


>At2g25830.1 68415.m03099 YebC-related contains Pfam profile
           PF01709: Domain of unknown function; contains TIGRFAM
           TIGR01033: conserved hypothetical protein; similar to
           YebC (GI:5771432) [Legionella pneumophila]
          Length = 331

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -3

Query: 260 SPTSISPQHHTNQHYTTI-YQIHH*NSLQRIQLRKILYNT 144
           S +SISP H T  H+T    Q    N  +++QLRKI  +T
Sbjct: 42  SLSSISP-HTTTSHFTAASQQSDDQNCFRKLQLRKISIST 80


>At4g01090.1 68417.m00147 extra-large G-protein-related contains
           weak similarity to extra-large G-protein [Arabidopsis
           thaliana] gi|3201682|gb|AAC19353
          Length = 714

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 16/48 (33%), Positives = 19/48 (39%)
 Frame = -3

Query: 347 GSAGVGTGPGVSSGRSFLRPATTRGAGDCSPTSISPQHHTNQHYTTIY 204
           G   V  GP +    S+  PAT    GD  P S    HH  +   T Y
Sbjct: 187 GGQYVELGPDIVEPHSYY-PATPGRYGDLPPYSPVSSHHREEKLATQY 233


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,436,943
Number of Sequences: 28952
Number of extensions: 187518
Number of successful extensions: 574
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 712739520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)