Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_J14
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    27   2.9  
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    26   5.1  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    25   6.8  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   6.8  
SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase Prs1|Schizo...    25   6.8  
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    25   9.0  
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S...    25   9.0  

>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = -2

Query: 307 MI*KHNNSFTSCKNKHINVVVSAPTRSYTIQHIITDSTVASSGASVC-HNMSRVAWIPFS 131
           +I K N  FT+ KN  INV+ S   ++  I      +    +    C  N+  +A +   
Sbjct: 628 LIIKSNEKFTAAKNSLINVIKSGFEQNEFINPYFLQTNYLKNLLCCCITNLVSLAILSKD 687

Query: 130 HSASV 116
           HSA++
Sbjct: 688 HSANL 692


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -3

Query: 144 GYRSLILHLF-CYSIAFVNFFFIQSCGRSLRPSVARFASF 28
           G  +L+  LF  YS+  + F  I SC    R S A+F SF
Sbjct: 384 GKSNLVHSLFDYYSLNSIYFQMIVSCSEIDRSSFAKFQSF 423


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 7/28 (25%), Positives = 14/28 (50%)
 Frame = -2

Query: 148 AWIPFSHSASVLLFHSFCKFFFHTVMWS 65
           +W+ F H   ++L   FC +    + W+
Sbjct: 203 SWLVFRHFVDLILMCDFCSYILMGLAWT 230


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -1

Query: 266  QTY*RSGVGSYPLIYNTTYYYGQHRRLV 183
            +TY    V  Y    NT YY G HR L+
Sbjct: 1768 ETYYHKAVEIYSECENTHYYLGHHRVLM 1795


>SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase
           Prs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 235 TRSYTIQHIITDSTVASSGASVC 167
           T  Y + HII D  + ++ ASVC
Sbjct: 235 TAKYLLGHIIDDEEIITTPASVC 257


>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 404 CTKYIKYILCNAKTVTLPSPSIVQ 333
           C +YI   LC+ K  T  +PS+++
Sbjct: 92  CLEYIVERLCSTKVSTYTTPSLIE 115


>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
           Atm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 693

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +1

Query: 451 FSMKRVGERERSAPNPRELLRPTASLTHLSYHY 549
           FS+KR+  + + AP+ R+L+    S+   + H+
Sbjct: 418 FSLKRINIQVKEAPDARDLVLKGGSIQFDNVHF 450


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,388,107
Number of Sequences: 5004
Number of extensions: 45374
Number of successful extensions: 119
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)