Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_J14
         (626 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0693 - 26334574-26336121                                         29   4.0  
10_07_0011 + 11788818-11789590,11789999-11790098,11790144-117903...    29   4.0  
04_04_0344 - 24536516-24537323,24537449-24537567,24539044-245394...    28   7.0  

>11_06_0693 - 26334574-26336121
          Length = 515

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 138 GIHATRDML*HTDAPDEATVLSVIICC 218
           GI   R+M  H + P+E T L V+ CC
Sbjct: 347 GIELYREMRTHGEMPNEVTFLGVLGCC 373


>10_07_0011 +
           11788818-11789590,11789999-11790098,11790144-11790380,
           11790683-11790754
          Length = 393

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -3

Query: 240 LLPAHIQYNILLRTAPSPRPARLCVTTCR 154
           LLP  +   IL R APSPR    C   C+
Sbjct: 6   LLPDDVLEEILRRLAPSPRSLAACRVVCK 34


>04_04_0344 -
           24536516-24537323,24537449-24537567,24539044-24539484,
           24540291-24540508,24540641-24540728
          Length = 557

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -3

Query: 195 PSPRPARLCVTTCRVSHGYRSLILHLFCYSIAFVNFFFIQSCGRSLRPSV 46
           P P      ++ C   HG+ ++ILH+  Y+ A     F + C R+  PS+
Sbjct: 118 PPPCNIEAELSNCEEVHGFNTVILHIGLYTWA-----FSEGCIRACTPSL 162


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,359,207
Number of Sequences: 37544
Number of extensions: 295904
Number of successful extensions: 733
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)