Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_J14
         (626 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_2764| Best HMM Match : Phytochelatin (HMM E-Value=0)                29   4.1  
SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18)             28   5.4  
SB_43323| Best HMM Match : Glyco_hydro_20 (HMM E-Value=3.7e-07)        28   7.1  
SB_55495| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  

>SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1776

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
 Frame = -2

Query: 229 SYTIQHIITDSTVASSGASVCHNMSRVAWIPFSHSASVLLFHSFCKFFFHTVMWSVLTS* 50
           ++TI  + T S       S+    +R     F+HS   L   S C  F HT+      S 
Sbjct: 355 THTICELFTRSICELFARSIFELFARSICELFTHSICELFTRSICGLFTHTICELFTRSI 414

Query: 49  CRAF-RVLCLSSVRGI 5
           C  F R +C    R I
Sbjct: 415 CELFARSICGLFTRSI 430


>SB_2764| Best HMM Match : Phytochelatin (HMM E-Value=0)
          Length = 413

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/54 (29%), Positives = 22/54 (40%)
 Frame = +2

Query: 461 REWERERGAPRTPANCCGRQPRSHTYPIIITLSDLFLTINSFVYDPADMWTVQW 622
           R    E  AP    + C +     TY     LS L +T+N+   DP  +W   W
Sbjct: 191 RSLAHENAAPFLSLSSCYKTQSELTY---CGLSTLAVTLNALCIDPQRIWKTPW 241


>SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18)
          Length = 1425

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +3

Query: 345 WRR*RYSFSITEYIFNIFCTDF 410
           W R R++  + +Y+F+ FC+ F
Sbjct: 112 WGRRRFAIEVFDYVFHCFCSSF 133


>SB_43323| Best HMM Match : Glyco_hydro_20 (HMM E-Value=3.7e-07)
          Length = 228

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 209 YYGQHRRLVRRVCVSQHVACRMD 141
           Y GQH+RL+ R  +S  V C  D
Sbjct: 195 YQGQHKRLIERGIISCPVGCSCD 217


>SB_55495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 858

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = -1

Query: 449 SHGTPASNLSF---DKKICTKYIKYILCNAKTVTLPSPSI 339
           +H  PA+NLS+   D+K+  KY  Y L    T  +PS ++
Sbjct: 720 THINPATNLSYASADRKMNAKYFGYSLGVKSTAFIPSIAV 759


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,380,007
Number of Sequences: 59808
Number of extensions: 351863
Number of successful extensions: 842
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)