Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_J14
         (626 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00065-3|AAK68286.3|  981|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AF098992-15|AAN39673.1|  340|Caenorhabditis elegans Hypothetical...    29   3.6  
AF098992-14|AAD34669.1|  346|Caenorhabditis elegans Hypothetical...    29   3.6  
AF098992-13|AAN39672.1|  385|Caenorhabditis elegans Hypothetical...    29   3.6  
AC024808-4|AAK29924.1|  252|Caenorhabditis elegans Hypothetical ...    28   6.3  

>U00065-3|AAK68286.3|  981|Caenorhabditis elegans Hypothetical
           protein D1044.8 protein.
          Length = 981

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 222 QYNILLRTAPSPRPARLCVTTCRVSHGYRS 133
           +Y+++  +APS  P+R  V TC   H  RS
Sbjct: 811 KYSVMFPSAPSAIPSRRRVQTCSTEHPARS 840


>AF098992-15|AAN39673.1|  340|Caenorhabditis elegans Hypothetical
           protein F53C3.13c protein.
          Length = 340

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -3

Query: 150 SHGYRSLILHLFCYSIAFVNFFFIQSCGRSLRPSVARFASFAYRP 16
           +H    L++ L+C    F+ +FF+  C   L   +A++     RP
Sbjct: 99  NHSVHRLVVRLYC----FIGYFFVGVCFNQLMVDIAKYTIGRQRP 139


>AF098992-14|AAD34669.1|  346|Caenorhabditis elegans Hypothetical
           protein F53C3.13a protein.
          Length = 346

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -3

Query: 150 SHGYRSLILHLFCYSIAFVNFFFIQSCGRSLRPSVARFASFAYRP 16
           +H    L++ L+C    F+ +FF+  C   L   +A++     RP
Sbjct: 99  NHSVHRLVVRLYC----FIGYFFVGVCFNQLMVDIAKYTIGRQRP 139


>AF098992-13|AAN39672.1|  385|Caenorhabditis elegans Hypothetical
           protein F53C3.13b protein.
          Length = 385

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -3

Query: 150 SHGYRSLILHLFCYSIAFVNFFFIQSCGRSLRPSVARFASFAYRP 16
           +H    L++ L+C    F+ +FF+  C   L   +A++     RP
Sbjct: 99  NHSVHRLVVRLYC----FIGYFFVGVCFNQLMVDIAKYTIGRQRP 139


>AC024808-4|AAK29924.1|  252|Caenorhabditis elegans Hypothetical
           protein Y53G8AM.7 protein.
          Length = 252

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -3

Query: 153 VSHGYRSLILHLFCYSIAFVNFFFIQSCGRSLR 55
           VS G  ++I  LF Y +A + F F+Q CG+ ++
Sbjct: 193 VSCGLLTVIPLLFGYFVAKIFFKFVQICGKGVK 225


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,434,939
Number of Sequences: 27780
Number of extensions: 264245
Number of successful extensions: 699
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)