Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_J14
         (626 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02880.1 68418.m00231 HECT-domain-containing protein / ubiqui...    28   4.4  
At5g55820.1 68418.m06956 expressed protein                             28   5.8  
At4g19090.1 68417.m02814 hypothetical protein contains Pfam doma...    27   7.7  
At1g32700.2 68414.m04033 zinc-binding family protein similar to ...    27   7.7  
At1g32700.1 68414.m04032 zinc-binding family protein similar to ...    27   7.7  

>At5g02880.1 68418.m00231 HECT-domain-containing protein /
            ubiquitin-transferase family protein /
            armadillo/beta-catenin-like repeat-containing protein
            similar to SP|Q14669 Thyroid receptor interacting protein
            12 (TRIP12) {Homo sapiens}; contains Pfam profiles
            PF00632: HECT-domain (ubiquitin-transferase), PF00514:
            Armadillo/beta-catenin-like repeat
          Length = 1502

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -1

Query: 491  GALLSLSPTLFIENSHGTPASNLSFDKKI-CTKYIK 387
            G L SLSP L I   HG+ +S+      + C  Y+K
Sbjct: 1439 GGLASLSPKLTIVRKHGSDSSDTDLPSVMTCANYLK 1474


>At5g55820.1 68418.m06956 expressed protein
          Length = 1826

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -2

Query: 289 NSFTSCKNKHINVVVSAPTRSYTIQHIITDSTVASSG 179
           NS +  K     + +S PT S+T+ H +   +++SSG
Sbjct: 350 NSNSQGKRGDQCIKISVPTESFTLHHEVDSVSISSSG 386


>At4g19090.1 68417.m02814 hypothetical protein contains Pfam domain,
           PF04578: Protein of unknown function, DUF594
          Length = 751

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +1

Query: 427 LDAGVPCEFSMKRVGERERSAPNPRELLRPTASLTHLSYHYYS 555
           +D  +  E +MK      R  P P +LL+P   LTHL    Y+
Sbjct: 190 MDTKLASEMNMKE----HRGQPKPLKLLQPHKELTHLEILQYA 228


>At1g32700.2 68414.m04033 zinc-binding family protein similar to
           zinc-binding protein [Pisum sativum] GI:16117799;
           contains Pfam profile PF04640 : Protein of unknown
           function, DUF597
          Length = 174

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 213 ILLRTAPSPRPARLCVTTCRVSHGYRSLI 127
           + L   P PRP +  + TC V   YRSL+
Sbjct: 61  VFLNERPQPRPGKGVINTCEVC--YRSLV 87


>At1g32700.1 68414.m04032 zinc-binding family protein similar to
           zinc-binding protein [Pisum sativum] GI:16117799;
           contains Pfam profile PF04640 : Protein of unknown
           function, DUF597
          Length = 213

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 213 ILLRTAPSPRPARLCVTTCRVSHGYRSLI 127
           + L   P PRP +  + TC V   YRSL+
Sbjct: 100 VFLNERPQPRPGKGVINTCEVC--YRSLV 126


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,310,409
Number of Sequences: 28952
Number of extensions: 231689
Number of successful extensions: 524
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)