Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_J13
         (569 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7677| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.5  
SB_33543| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_58205| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_38444| Best HMM Match : TMS_TDE (HMM E-Value=0)                     27   8.2  
SB_18269| Best HMM Match : CUB (HMM E-Value=7.4e-37)                   27   8.2  

>SB_7677| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 497

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +1

Query: 304 SASTAGTCSLKSLVTTLNNMRISRSSGPTPGCAGKRVH*LSTQTAPQVLWSRYL*LETKI 483
           SA+TA   S+   + TL    +S ++GPTP  + ++   L+ + +   L      + + +
Sbjct: 113 SATTAQDSSVLDTLATLATATLSHNTGPTPSTSMQQATSLAGRISVTPLTLSQNTISSSL 172

Query: 484 TG-SVPLAP 507
           +G S PL P
Sbjct: 173 SGLSTPLTP 181


>SB_33543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 838

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 322 TCSLKSLVTTLNNMRISRSSGPTPGC 399
           T + K+++TTL  MRI  ++GP   C
Sbjct: 654 TTTKKTIITTLTTMRICAANGPLIDC 679


>SB_58205| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 153

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/30 (50%), Positives = 15/30 (50%)
 Frame = +2

Query: 395 GAPASGCTNCQLRRHLRCYGQGTYNWKRKS 484
           G PA    N QL R  RC    TY W RKS
Sbjct: 73  GKPAYFAKNLQLDRK-RCLYPKTYTWDRKS 101


>SB_38444| Best HMM Match : TMS_TDE (HMM E-Value=0)
          Length = 1031

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 237 TRQSSSKHTKMFAKLFLVSVLLVGVNSRY 323
           TR  S KH +   K F+  VL  G+NS +
Sbjct: 10  TRSFSEKHNESNVKPFMTEVLSTGINSLF 38


>SB_18269| Best HMM Match : CUB (HMM E-Value=7.4e-37)
          Length = 1655

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/68 (25%), Positives = 34/68 (50%)
 Frame = +3

Query: 240  RQSSSKHTKMFAKLFLVSVLLVGVNSRYVLVEEPGYYIEQYEDQPEQWANSRVRRQAGAL 419
            ++ +  H+ +   L L   L+ GV    + +++  Y  E ++   E W + R+ + AGAL
Sbjct: 1033 KEDNKVHSYLLTNLALADFLM-GVYMLLIAIKDVEYQGEYFKHDIE-WRSGRLCQFAGAL 1090

Query: 420  TVNSDGTS 443
            ++ S   S
Sbjct: 1091 SLTSSEVS 1098


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,897,052
Number of Sequences: 59808
Number of extensions: 323912
Number of successful extensions: 896
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)