Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_J13
         (569 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF024494-13|AAB70328.1|  398|Caenorhabditis elegans Nuclear horm...    29   2.4  
AL117204-13|CAB55128.1|  286|Caenorhabditis elegans Hypothetical...    28   4.1  
Z68117-1|CAA92181.2|  459|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AF016425-6|AAY86242.1|  104|Caenorhabditis elegans Hypothetical ...    28   5.4  
U39999-16|AAX55691.1|   88|Caenorhabditis elegans Hypothetical p...    27   9.5  

>AF024494-13|AAB70328.1|  398|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 260 protein.
          Length = 398

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -2

Query: 331 TSTYRLLTPTKRTDTRNNLANIFVCLLEDCRVLNDA*NSSQ 209
           TS   LL P+  T + ++ ++I  CL E C+V  D  N+S+
Sbjct: 12  TSEDALLLPSTATPSSSSPSSIPKCLTERCKVCEDRSNNSR 52


>AL117204-13|CAB55128.1|  286|Caenorhabditis elegans Hypothetical
           protein Y116A8C.22 protein.
          Length = 286

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +2

Query: 413 CTNCQLRRHLRCYGQGTYNWKRKSQAQC 496
           CT CQ   HL+C G  +  W   SQ QC
Sbjct: 256 CTKCQKWVHLKCTGIRSKQW--NSQFQC 281


>Z68117-1|CAA92181.2|  459|Caenorhabditis elegans Hypothetical
           protein F45E6.3 protein.
          Length = 459

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 224 SIIQDSTVLKQTHKDVRQVIPRISSF 301
           +  QD+ VL Q  KDVR++ P I  F
Sbjct: 110 AFFQDNKVLSQIDKDVRRLYPEIQFF 135


>AF016425-6|AAY86242.1|  104|Caenorhabditis elegans Hypothetical
           protein F59A7.11 protein.
          Length = 104

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +3

Query: 285 LVSVLLVGVNSRYVLVEEPGYYIEQYEDQPEQWANSRVRRQAGALTVNSDGTS 443
           L++ LL  +    V+   PG   +  ED  +     R RR  G  TV +DG++
Sbjct: 4   LINSLLFTIAILAVVWGYPGQQADHVEDLTKNRNEPRARRDLGTETVRADGSA 56


>U39999-16|AAX55691.1|   88|Caenorhabditis elegans Hypothetical
           protein F41G3.18 protein.
          Length = 88

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 23  RLFLVNIKEPGIH*YHNYSLMSQPETKFQC 112
           R  +VN++ P +     YS++S P  K +C
Sbjct: 13  RKSIVNVESPRVRRDSGYSMLSNPPKKLEC 42


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,288,727
Number of Sequences: 27780
Number of extensions: 238778
Number of successful extensions: 685
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)