Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_J11
(387 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual 46 2e-06
SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual 33 0.021
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 27 1.4
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 26 2.4
SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces p... 25 4.1
SPCC16C4.11 |pef1||Pho85/PhoA-like cyclin-dependent kinase Pef1|... 25 4.1
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d... 25 4.1
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 25 5.5
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa... 25 5.5
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce... 25 5.5
SPBC365.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 24 7.2
SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr 1|||... 24 7.2
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom... 24 7.2
SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr 2|... 24 7.2
SPCC16A11.10c |oca8||cytochrome b5 |Schizosaccharomyces pombe|ch... 24 9.6
>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 272
Score = 46.0 bits (104), Expect = 2e-06
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 2/110 (1%)
Frame = +2
Query: 2 GNVIGKHRKNHIPRVGDFNESNYYMEGNTGHPVFATRYGKIAVNICFGRHHVLNWMMFGL 181
GN+ G +RK H+ F+ + + + P+F T +GK+ V IC+ + L
Sbjct: 110 GNLGGVYRKVHL-----FDTERKHFKKGSDFPIFETSFGKLGVMICWDTAFPEVARIHAL 164
Query: 182 NGAEIVFNPSATIAAEAGSEYM--WNIEARNAAITNCYFTAAINRVGYEE 325
NGA+++ +A + Y W++ + A NC A NRVG +E
Sbjct: 165 NGADLL-----VVATNWENPYSDDWDLVTKARAFENCIPLVAANRVGTDE 209
>SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 276
Score = 32.7 bits (71), Expect = 0.021
Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 6/105 (5%)
Frame = +2
Query: 2 GNVIGKHRKNHIPRVGDFN-----ESNYYMEGNTGHPVFATRYGKIAVNICFGRHHVLNW 166
G +I ++ K H+ V N ESN + G P T GK+ ICF
Sbjct: 106 GEIISRYSKAHLFDVEIKNGPTLKESNTTLRGEAILPPCKTPLGKVGSAICFDIRFPEQA 165
Query: 167 MMFGLNGAEIVFNPSATIAAEAGSEYMWNIEARNAAI-TNCYFTA 298
+ GA I+ PSA + G+ + W + R A+ + CY A
Sbjct: 166 IKLRNMGAHIITYPSA-FTEKTGAAH-WEVLLRARALDSQCYVIA 208
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 26.6 bits (56), Expect = 1.4
Identities = 14/25 (56%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Frame = -1
Query: 261 ASIFHIYS-LPASAAMVADGLNTIS 190
AS F +Y+ LP S+AMV DG++ IS
Sbjct: 24 ASYFLLYNNLPLSSAMVHDGVHLIS 48
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 25.8 bits (54), Expect = 2.4
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -3
Query: 328 EFLITDPVDSRREVAISYSSISCF-DIPH 245
E ++DPV E A+ SSI CF D P+
Sbjct: 665 EIRVSDPVARFCETAVDTSSIKCFSDTPN 693
>SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 335
Score = 25.0 bits (52), Expect = 4.1
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = -1
Query: 312 TLLIAAVK*QLVIAAFLASIFHIYSLPASAAMVADGLNTISAPFNPNIIQFRT 154
T+L+ A Q + L ++ + PA+AA+ TISA I FRT
Sbjct: 110 TMLLPANTVQFLGYEQLLPLYSDWGFPAAAAIAGASARTISATIVSPIELFRT 162
>SPCC16C4.11 |pef1||Pho85/PhoA-like cyclin-dependent kinase
Pef1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 288
Score = 25.0 bits (52), Expect = 4.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 282 IATSRRLSTGSVMRNSRMSSLRLTGSPRTKTW 377
+AT R L GS + + RL G+P ++W
Sbjct: 195 MATGRPLFAGSNNEDQLLKIFRLLGTPTEQSW 226
>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 380
Score = 25.0 bits (52), Expect = 4.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 238 TSRFSCYGRRRVKYNLCSI*SEHHPI*DM 152
TSRFSC G + + CS SE+ + D+
Sbjct: 132 TSRFSCNGNTLLHFMGCSTFSEYTVVADI 160
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 24.6 bits (51), Expect = 5.5
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 203 NPSATIAAEAGSEYMWNIEARNAAITNCYFTAAINRV 313
+P +A EA + + +A+N AI N + A+NR+
Sbjct: 702 HPWLIVAREAAVDDNDSFQAKNRAIYNQIYPEAVNRL 738
>SPBC418.02 |||NatA N-acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 24.6 bits (51), Expect = 5.5
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +2
Query: 41 RVGDFNESNYYMEGNTGH-PVFATRY-GKIAVNICFG 145
++GD+ ESNY++ H P + + K + +C G
Sbjct: 377 KLGDYEESNYWLNLAIDHTPTYPELFLAKAKIFLCMG 413
>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 24.6 bits (51), Expect = 5.5
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 294 RRLSTGSVMRNSRMSSLRLTGSPRTKTW 377
R L TG+V+++ + LR++ PR + W
Sbjct: 183 RDLKTGAVIKDVSEAVLRISCIPRVEDW 210
>SPBC365.16 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 277
Score = 24.2 bits (50), Expect = 7.2
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +3
Query: 312 SVMRNSRMSSLRLTGSPRTKTWGC 383
S++++S + TGSPR W C
Sbjct: 132 SILKDSFFTKFWGTGSPRPLPWSC 155
>SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 356
Score = 24.2 bits (50), Expect = 7.2
Identities = 16/32 (50%), Positives = 16/32 (50%)
Frame = -3
Query: 343 SELIREFLITDPVDSRREVAISYSSISCFDIP 248
S LIRE I PV A YSS SC IP
Sbjct: 294 SSLIREHNI--PVVYSHRTAEGYSSNSCLGIP 323
>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 592
Score = 24.2 bits (50), Expect = 7.2
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 11 IGKHRKNHIPRVGDF 55
+GKHRKN + R G F
Sbjct: 96 LGKHRKNRLRRPGRF 110
>SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 24.2 bits (50), Expect = 7.2
Identities = 16/32 (50%), Positives = 16/32 (50%)
Frame = -3
Query: 343 SELIREFLITDPVDSRREVAISYSSISCFDIP 248
S LIRE I PV A YSS SC IP
Sbjct: 294 SSLIREHNI--PVVYSHRTAEGYSSNSCLGIP 323
>SPCC16A11.10c |oca8||cytochrome b5 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 129
Score = 23.8 bits (49), Expect = 9.6
Identities = 9/27 (33%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -2
Query: 164 NLGHDDDQSRCSQRFY-RSVLRRQDAP 87
++GH +D ++FY ++LR +D P
Sbjct: 59 DVGHSEDAQELLEKFYIGNLLRTEDGP 85
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,707,646
Number of Sequences: 5004
Number of extensions: 33847
Number of successful extensions: 77
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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