Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_J11
(387 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683... 213 5e-56
02_04_0096 + 19669428-19669525,19670770-19670818,19671041-196711... 56 7e-09
09_06_0051 - 20498261-20498362,20498491-20498612,20498694-204987... 29 1.3
03_02_0422 - 8308711-8309100,8309197-8310724,8311394-8313411 28 3.0
02_01_0092 - 650534-650553,650638-651013,651125-651349 28 3.0
04_04_0604 - 26546363-26548363 27 3.9
02_05_0058 + 25478274-25478421,25478963-25479142,25479714-254800... 27 3.9
12_01_0216 + 1644769-1644926,1645705-1645837,1645966-1646182,164... 27 5.2
05_03_0475 + 14486969-14487140,14487215-14487338,14487424-144875... 27 5.2
03_03_0280 - 16166962-16167393,16167646-16167770,16168305-161686... 27 5.2
08_01_0090 - 649631-651162,653189-655019,655313-655365,655731-65... 27 6.9
>07_03_0405 -
17767303-17767665,17767815-17768039,17768115-17768342,
17768607-17768621,17768622-17768810,17769106-17769213,
17769917-17770045
Length = 418
Score = 213 bits (519), Expect = 5e-56
Identities = 97/128 (75%), Positives = 102/128 (79%)
Frame = +2
Query: 2 GNVIGKHRKNHIPRVGDFNESNYYMEGNTGHPVFATRYGKIAVNICFGRHHVLNWMMFGL 181
GN+IG HRKNHIPRVGDFNES YYMEGNTGHPVF T YGKI VNIC+GRHH LNW+ FGL
Sbjct: 215 GNIIGIHRKNHIPRVGDFNESTYYMEGNTGHPVFETAYGKIGVNICYGRHHPLNWLAFGL 274
Query: 182 NGAEIVFNPSATIAAEAGSEYMWNIEARNAAITNCYFTAAINRVGYEEFPNEFTSADGKP 361
NGAEIVFNPSAT+ SE MW IEARNAAI N YF +INRVG E FPN FTS DGKP
Sbjct: 275 NGAEIVFNPSATVGEL--SEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKP 332
Query: 362 AHKDLGLF 385
H D G F
Sbjct: 333 QHADFGHF 340
>02_04_0096 +
19669428-19669525,19670770-19670818,19671041-19671132,
19671235-19671386,19671478-19671524,19671617-19671650,
19671769-19671935,19672070-19672166,19672239-19672408
Length = 301
Score = 56.4 bits (130), Expect = 7e-09
Identities = 39/117 (33%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Frame = +2
Query: 2 GNVIGKHRKNHIPRVGDFNESNYYMEGNTGHPVFATRYGKIAVNICFGRHHVLNWMMFGL 181
G +G +RK+HIP + E Y+ G+TG F T+Y I V IC+ + L
Sbjct: 115 GTDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKAFKTKYATIGVGICWDQWFPECARAMVL 174
Query: 182 NGAEIVFNPSATIAAE-----AGSEYMWNIEARNAAITNCYFTAAINRVGYEEFPNE 337
GAEI+F P+A I +E S W + A N A NR+G E E
Sbjct: 175 QGAEILFYPTA-IGSEPQDNNLDSREHWKRVMQGHAGANLVPLVASNRIGRETVETE 230
>09_06_0051 -
20498261-20498362,20498491-20498612,20498694-20498741,
20498832-20498934,20499038-20499112,20499362-20499478,
20499591-20499656,20500527-20500632,20501196-20501275,
20501372-20501443
Length = 296
Score = 29.1 bits (62), Expect = 1.3
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 282 IATSRRLSTGSVMRNSRMSSLRLTGSPRTKTWG 380
++T+ + + +R + S+LRL GSPR WG
Sbjct: 1 MSTAAAAAASTSLRPASQSALRLAGSPRRWCWG 33
>03_02_0422 - 8308711-8309100,8309197-8310724,8311394-8313411
Length = 1311
Score = 27.9 bits (59), Expect = 3.0
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +2
Query: 125 AVNICFGRHHVLNWMMFGLNGAEIVFNPS 211
A + H+VL W F LNGA NPS
Sbjct: 917 ATGLSIAYHYVLGWS-FSLNGAAPALNPS 944
>02_01_0092 - 650534-650553,650638-651013,651125-651349
Length = 206
Score = 27.9 bits (59), Expect = 3.0
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 294 RRLSTGSVMRNSRMSSLRLTGSPRTKTWGCS 386
RR S+GS + RMSS+ +GSP +G S
Sbjct: 158 RRDSSGSAADDDRMSSMSCSGSPDDDDYGGS 188
>04_04_0604 - 26546363-26548363
Length = 666
Score = 27.5 bits (58), Expect = 3.9
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +2
Query: 125 AVNICFGRHHVLNWMMFGLNGAEIVFNPSA 214
A I F RH+VL W F +NGA N S+
Sbjct: 244 ATGILFCRHYVLGW-SFKMNGAAPALNISS 272
>02_05_0058 +
25478274-25478421,25478963-25479142,25479714-25480007,
25480261-25480564,25480672-25480751,25480765-25480934
Length = 391
Score = 27.5 bits (58), Expect = 3.9
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +2
Query: 2 GNVIGKHRKNHIPRVGDFNESNYYMEGNTGHPVFATRYGKIAVNICF-GRHHVLNWMMFG 178
G +GKHRK + G + +G+T PV+ T GKI IC+ R +L M+
Sbjct: 150 GKYLGKHRK--VMPTGLERVFWGFGDGST-IPVYDTPIGKIGAVICWENRMPLLRTAMYA 206
Query: 179 LNGAEIVFNPSA 214
G +I P+A
Sbjct: 207 -KGVQIYCAPTA 217
>12_01_0216 +
1644769-1644926,1645705-1645837,1645966-1646182,
1646241-1646310,1646311-1646482,1646559-1646753
Length = 314
Score = 27.1 bits (57), Expect = 5.2
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -3
Query: 286 AISYSSISCFDIPHILTSRF 227
AIS SS SCF +P +LT F
Sbjct: 35 AISASSSSCFAVPELLTPGF 54
>05_03_0475 +
14486969-14487140,14487215-14487338,14487424-14487559,
14487663-14488997
Length = 588
Score = 27.1 bits (57), Expect = 5.2
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +3
Query: 285 ATSRRLSTGSVMRNSRMSSLRLTGSPRTKTW--GC 383
A+S R++ G +SR ++ L PR TW GC
Sbjct: 512 ASSPRVAAGDAFPSSRYDAMLLREDPRNLTWLHGC 546
>03_03_0280 -
16166962-16167393,16167646-16167770,16168305-16168645,
16171153-16171313
Length = 352
Score = 27.1 bits (57), Expect = 5.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 71 YMEGNTGHPVFATRYGKIAVNICFGRHHVL 160
Y+E + G P + Y A + FGRH VL
Sbjct: 113 YLEPDRGRPSQFSLYSSPAARLGFGRHRVL 142
>08_01_0090 -
649631-651162,653189-655019,655313-655365,655731-655735,
656209-656411,656837-657292,657718-657805,657917-658017,
658404-658631,659128-659445,659528-659812,660148-660711
Length = 1887
Score = 26.6 bits (56), Expect = 6.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 191 LLHLIRTSSNLGHDDDQSRCSQRFYRS 111
L+H R+SS LG + +QRFY S
Sbjct: 572 LMHAGRSSSTLGRSSGTDQNAQRFYTS 598
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,076,195
Number of Sequences: 37544
Number of extensions: 220420
Number of successful extensions: 504
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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