Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_J11
         (387 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11184| Best HMM Match : CN_hydrolase (HMM E-Value=4.4e-10)          32   0.19 
SB_8782| Best HMM Match : CN_hydrolase (HMM E-Value=0)                 32   0.19 
SB_15138| Best HMM Match : CLN3 (HMM E-Value=4.4e-05)                  30   0.76 
SB_58571| Best HMM Match : PLAT (HMM E-Value=1.2e-22)                  29   1.3  
SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)      27   5.3  
SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.3  

>SB_11184| Best HMM Match : CN_hydrolase (HMM E-Value=4.4e-10)
          Length = 128

 Score = 31.9 bits (69), Expect = 0.19
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
 Frame = +2

Query: 2   GNVIGKHRKNH-----IPRVGDFNESNYYMEGNTGHPVFATRYGKIAVNICF 142
           GN++GKHRK H     +P    F ES     G     +  T Y KI + IC+
Sbjct: 63  GNLMGKHRKIHLFDIDVPGKIRFQESEVLSPGE-NLTILDTEYCKIGIGICY 113


>SB_8782| Best HMM Match : CN_hydrolase (HMM E-Value=0)
          Length = 242

 Score = 31.9 bits (69), Expect = 0.19
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
 Frame = +2

Query: 2   GNVIGKHRKNH-----IPRVGDFNESNYYMEGNTGHPVFATRYGKIAVNICF 142
           GN++GKHRK H     +P    F ES     G     +  T Y KI + IC+
Sbjct: 107 GNLMGKHRKIHLFDIDVPGKIRFQESEVLSPGE-NLTILDTEYCKIGIGICY 157


>SB_15138| Best HMM Match : CLN3 (HMM E-Value=4.4e-05)
          Length = 662

 Score = 29.9 bits (64), Expect = 0.76
 Identities = 13/55 (23%), Positives = 27/55 (49%)
 Frame = -3

Query: 379 PQVFVRGLPVSRSELIREFLITDPVDSRREVAISYSSISCFDIPHILTSRFSCYG 215
           P    R LP   + ++  +++T   +S+RE  I+   + C+ +   +   +S YG
Sbjct: 585 PYTVTRVLPYIVTRIL-PYIVTSSAESKREACIALRHMQCYGVLLAMWDEYSLYG 638


>SB_58571| Best HMM Match : PLAT (HMM E-Value=1.2e-22)
          Length = 651

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = -2

Query: 185 HLIRTSSNLGHDDDQSRCSQRFYRSVLRRQDAPYYLP 75
           ++I TS+NL  D + +  + +F R +LR+ + PYY P
Sbjct: 38  NVIFTSTNLSADTEVTLSADQF-RLLLRKYNGPYYRP 73


>SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)
          Length = 482

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 50  DFNESNYYMEGNTGHPVFATRYGK 121
           D ++  ++  G+TGH +F  R+GK
Sbjct: 129 DAHQRLFHCHGHTGHEIFILRHGK 152


>SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2532

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +2

Query: 113  YGKIAVNICFGRHHVLNWMMFGLNGAEIVFNPSATIAAEAGSEYMW 250
            + K+   + F  H+       G N  E+ F PS T+++ A   Y+W
Sbjct: 1180 FQKMKEKLGFPIHNPYKRYHRGENNLEVSFGPSQTLSSVAYQLYVW 1225


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,735,641
Number of Sequences: 59808
Number of extensions: 251863
Number of successful extensions: 526
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 669365910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)