Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_J10
(448 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos... 153 1e-38
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S... 149 2e-37
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc... 28 0.75
SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|ch... 25 4.0
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi... 25 7.0
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni... 25 7.0
SPCP1E11.10 |||ankyrin repeat protein, unknown biological role|S... 25 7.0
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar... 25 7.0
>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 1|||Manual
Length = 187
Score = 153 bits (371), Expect = 1e-38
Identities = 78/151 (51%), Positives = 105/151 (69%), Gaps = 2/151 (1%)
Frame = +2
Query: 2 DINHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRPPISL 181
DI H RK +R++ S++V T+++FN+ IL+RLF S+ NRPPIS+
Sbjct: 4 DIERHHVRKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPISI 63
Query: 182 SRLAR--HMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGEIL 355
S++A K + EG V+VGTV++D RL TVPK++VAAL T+ ARARIL AGGE+L
Sbjct: 64 SKIAALTSRKSASLEGKTTVIVGTVTDDERLLTVPKLSVAALRFTKSARARILKAGGEVL 123
Query: 356 TFDQLALRAPTGRKTVLVQGRRNAREAVRHF 448
T DQLALRAPTG TVL++G+++AREA RHF
Sbjct: 124 TLDQLALRAPTGSNTVLLRGKKHAREAYRHF 154
>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 149 bits (361), Expect = 2e-37
Identities = 75/151 (49%), Positives = 104/151 (68%), Gaps = 2/151 (1%)
Frame = +2
Query: 2 DINHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRPPISL 181
DI H +K +R++ S++V T+++FN+ IL+RLF S+ NRPPIS+
Sbjct: 4 DIERHHVKKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPISI 63
Query: 182 SRLAR--HMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGEIL 355
S++A K + + VVVGTV++D R+ TVPK+++AAL T+ ARARIL AGGE+L
Sbjct: 64 SKIAALTSRKSASSQNKTTVVVGTVTDDERMLTVPKLSIAALRFTKSARARILKAGGEVL 123
Query: 356 TFDQLALRAPTGRKTVLVQGRRNAREAVRHF 448
T DQLALRAPTG TVLV+G+++AREA RHF
Sbjct: 124 TLDQLALRAPTGSNTVLVRGKKHAREAYRHF 154
>SPBC19G7.06 |mbx1||MADS-box transcription factor
Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 27.9 bits (59), Expect = 0.75
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 163 PTSDFFVPFGTPHEEAYTRGFDRCSR 240
P +D F+PF TP +AY + R R
Sbjct: 209 PQTDNFIPFLTPKRQAYGQSSSRADR 234
>SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 548
Score = 25.4 bits (53), Expect = 4.0
Identities = 15/60 (25%), Positives = 30/60 (50%)
Frame = +2
Query: 167 PPISLSRLARHMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGG 346
PP+ S L + T + L ++ + + R+ T+PK+ + L + +R +L +GG
Sbjct: 206 PPVDESFLMGSISSDTVDTLHTYLIKALQD--RVLTIPKLCSSNLDCSHYSRVCVLYSGG 263
>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
Gut2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 649
Score = 24.6 bits (51), Expect = 7.0
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -3
Query: 98 PSICTVLPIVSSTHPET*LRCAELSCRVYD 9
P +CTVLPI+ + + + C++YD
Sbjct: 150 PHLCTVLPIMIPVYKWWQVPYFFVGCKIYD 179
>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 230
Score = 24.6 bits (51), Expect = 7.0
Identities = 8/29 (27%), Positives = 17/29 (58%)
Frame = +2
Query: 362 DQLALRAPTGRKTVLVQGRRNAREAVRHF 448
D++ + P G K + Q ++ R A++H+
Sbjct: 120 DEILPKEPAGSKEAMQQKKKEKRAALKHY 148
>SPCP1E11.10 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 207
Score = 24.6 bits (51), Expect = 7.0
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -2
Query: 111 FVRLAKYLYSFTN 73
F LAKYLYSFT+
Sbjct: 114 FPELAKYLYSFTD 126
>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 205
Score = 24.6 bits (51), Expect = 7.0
Identities = 18/59 (30%), Positives = 26/59 (44%)
Frame = +2
Query: 257 DVRLYTVPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGRKTVLVQGRRNARE 433
D L VP + VT R + GG + R+ T R+T+L G RN+R+
Sbjct: 61 DANLSNVPTINSIPSPVT---RPPVAVGGGIFYGARRTRNRSQTQRRTLLENGFRNSRK 116
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,740,065
Number of Sequences: 5004
Number of extensions: 32047
Number of successful extensions: 87
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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