Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_J10
(448 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.) 155 1e-38
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_6617| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_9412| Best HMM Match : Peptidase_M1 (HMM E-Value=3.1e-07) 28 4.0
SB_32080| Best HMM Match : Plasmid_stabil (HMM E-Value=5.7) 27 5.3
SB_7409| Best HMM Match : DUF963 (HMM E-Value=1.6) 27 5.3
SB_16747| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_2504| Best HMM Match : Profilin (HMM E-Value=2.9) 27 7.1
SB_472| Best HMM Match : Cas1p (HMM E-Value=0) 27 7.1
SB_49088| Best HMM Match : 2_5_RNA_ligase (HMM E-Value=3.1) 27 7.1
SB_59069| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_40803| Best HMM Match : SRCR (HMM E-Value=0.00013) 27 9.3
SB_23787| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_11833| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_7411| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
>SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1066
Score = 155 bits (377), Expect = 1e-38
Identities = 80/148 (54%), Positives = 99/148 (66%)
Frame = +2
Query: 2 DINHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRPPISL 181
DI KH +K R E SQ+V TNAKFNQI+++RL MSR RPP+SL
Sbjct: 111 DIEKKHPKKNYRREPVSQNVYIRLLVKLYRFLSRRTNAKFNQIVMKRLCMSRTKRPPLSL 170
Query: 182 SRLARHMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGEILTF 361
+RL R MK + I VVVG++++D R++ VP + + AL +E ARARIL AGGEILTF
Sbjct: 171 ARLVRKMKASGHKDKICVVVGSITDDKRIFEVPALKICALRFSETARARILKAGGEILTF 230
Query: 362 DQLALRAPTGRKTVLVQGRRNAREAVRH 445
DQLALRAP G+ TVL+QG R AREA RH
Sbjct: 231 DQLALRAPLGQNTVLLQGPRKAREAERH 258
>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 28.7 bits (61), Expect = 2.3
Identities = 22/79 (27%), Positives = 35/79 (44%)
Frame = +2
Query: 182 SRLARHMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGEILTF 361
SRL MK PT++G+ V VS +T A E+ RAR+L G +
Sbjct: 92 SRLYEEMKHPTQDGMFVAVNSEVSVTFVGKEKEDVTFAKCAWFER-RARMLKGFGFVTFR 150
Query: 362 DQLALRAPTGRKTVLVQGR 418
D + + +K ++ G+
Sbjct: 151 DPATIESVLAKKPHILDGK 169
>SB_6617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 27.9 bits (59), Expect = 4.0
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = -1
Query: 436 CLTSITATLNQYCLTSSGRTE 374
CLTSIT+T Q CLTS T+
Sbjct: 21 CLTSITSTDPQLCLTSITSTD 41
Score = 27.9 bits (59), Expect = 4.0
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = -1
Query: 436 CLTSITATLNQYCLTSSGRTE 374
CLTSIT+T Q CLTS T+
Sbjct: 81 CLTSITSTDPQLCLTSITSTD 101
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = -1
Query: 436 CLTSITATLNQYCLTSSGRTE 374
CLTSIT+T Q CLT TE
Sbjct: 201 CLTSITSTDPQPCLTGINTTE 221
Score = 27.1 bits (57), Expect = 7.1
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = -1
Query: 436 CLTSITATLNQYCLTSSGRTE 374
CLTSIT+T Q CLTS T+
Sbjct: 9 CLTSITSTDPQPCLTSITSTD 29
Score = 27.1 bits (57), Expect = 7.1
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = -1
Query: 436 CLTSITATLNQYCLTSSGRTE 374
CLTSIT+T Q CLTS T+
Sbjct: 129 CLTSITSTDPQPCLTSIKSTD 149
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -1
Query: 436 CLTSITATLNQYCLTS 389
CLTSIT+T Q CLTS
Sbjct: 237 CLTSITSTNPQPCLTS 252
>SB_9412| Best HMM Match : Peptidase_M1 (HMM E-Value=3.1e-07)
Length = 1844
Score = 27.9 bits (59), Expect = 4.0
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -1
Query: 256 IGDCANDYSDQ-TLACRLLHVACQTGQRNRRSVDTAHK 146
IG+ +N S+ +LA R++H GQ N SV T HK
Sbjct: 657 IGESSNSSSNYASLASRIMHGDDVPGQDNDGSVSTIHK 694
>SB_32080| Best HMM Match : Plasmid_stabil (HMM E-Value=5.7)
Length = 284
Score = 27.5 bits (58), Expect = 5.3
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 103 THECQVQPDHPTEIVYEPYQPTSDFFVPFG 192
T + +P PT+I + ++P++DFF P G
Sbjct: 16 TKSYKKEPTKPTQIHTKRWRPSTDFFEPDG 45
>SB_7409| Best HMM Match : DUF963 (HMM E-Value=1.6)
Length = 183
Score = 27.5 bits (58), Expect = 5.3
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 118 VQPDHPTEIVYEPYQPTSDFFVPF 189
+ P P+ I+ PYQP+S P+
Sbjct: 121 INPYQPSSIIINPYQPSSTIINPY 144
>SB_16747| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 82
Score = 27.1 bits (57), Expect = 7.1
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +1
Query: 61 VLETIGKTVQILG*THECQVQPDHPTEIVYEPYQPTSDFFVPFG 192
+++T QI T + +P PT+I + ++P++DFF P G
Sbjct: 4 MIDTAADQCQIA--TKSYKKEPIKPTQIHTKRWRPSTDFFEPDG 45
>SB_2504| Best HMM Match : Profilin (HMM E-Value=2.9)
Length = 191
Score = 27.1 bits (57), Expect = 7.1
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = +2
Query: 110 NAKFNQIILRRLFMSRINRPPISLSRLARHMKKPTREGLIAVVVGTVSNDVRLYTVPKMT 289
N + NQI +RLF IN PP L+ +A T L + G ND L + T
Sbjct: 91 NLQRNQITQKRLFNLLIN-PPTQLAGIAASENNKTVRHLGRHLTGHAKNDA-LSSENNKT 148
Query: 290 VAAL--HVTEKARARILAA 340
V L H+T A+ L++
Sbjct: 149 VRHLGRHLTGHAKNDALSS 167
>SB_472| Best HMM Match : Cas1p (HMM E-Value=0)
Length = 932
Score = 27.1 bits (57), Expect = 7.1
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -1
Query: 280 RNSVKPHIIGDCANDYSDQTLACRLLHVACQTGQRNRRSVDTAHKQS 140
R+ + P + Y + T C + H A + +RN R+ +T H QS
Sbjct: 495 RHGLAPRMPASDPYGYHNDTGTCHI-HTAERLARRNPRNTETNHDQS 540
>SB_49088| Best HMM Match : 2_5_RNA_ligase (HMM E-Value=3.1)
Length = 410
Score = 27.1 bits (57), Expect = 7.1
Identities = 22/81 (27%), Positives = 35/81 (43%)
Frame = +2
Query: 122 NQIILRRLFMSRINRPPISLSRLARHMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAAL 301
N + R + R+NR P L+ R +K+ ++G+I V V + + V
Sbjct: 129 NSVARLRGLLRRLNRQPEVLAEYDRIIKEQLQKGIIEEVANLELEGVNHFFSHREVVTKE 188
Query: 302 HVTEKARARILAAGGEILTFD 364
T K R A+ EI+ FD
Sbjct: 189 SETTKVRIVYDASAREIV-FD 208
>SB_59069| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 664
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 90 DTWLDARMPSSTRSSYGDCL*AVSTDLRFLCP 185
D W+D R T +S +C V T R++CP
Sbjct: 571 DAWMDLRSCDGTEASVTEC---VGTFDRYICP 599
>SB_40803| Best HMM Match : SRCR (HMM E-Value=0.00013)
Length = 269
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 90 DTWLDARMPSSTRSSYGDCL*AVSTDLRFLCP 185
D W+D R T +S +C V T R++CP
Sbjct: 191 DAWMDLRSCDGTEASVTEC---VGTFDRYICP 219
>SB_23787| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 90 DTWLDARMPSSTRSSYGDCL*AVSTDLRFLCP 185
D W+D R T +S +C V T R++CP
Sbjct: 150 DAWMDLRSCDGTEASVTEC---VGTFDRYICP 178
>SB_11833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 636
Score = 26.6 bits (56), Expect = 9.3
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = -1
Query: 256 IGDCANDYSDQTLACRLLHVACQTGQRNRRS-VDTAHKQS 140
+ ++Y +L C + CQT Q R++ +D H S
Sbjct: 178 LASAMHEYCSISLVCAQIRALCQTNQSKRKTDIDHLHASS 217
>SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1304
Score = 26.6 bits (56), Expect = 9.3
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Frame = -1
Query: 298 CGYCHFRNSVKPHIIG----DCANDYSDQTLACRLLHVAC-QTGQR 176
C C + S +PH+IG +C DY D T AC TG +
Sbjct: 709 CDQCGGQCSCRPHVIGRKCDECRPDYYDFTSGLGCKACACNMTGSK 754
>SB_7411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 168
Score = 26.6 bits (56), Expect = 9.3
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 221 GLIAVVVGTVSNDVRLYTVPKM 286
G +A++V S VR+YTVPK+
Sbjct: 79 GGLALIVSLYSPSVRIYTVPKI 100
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,707,691
Number of Sequences: 59808
Number of extensions: 267455
Number of successful extensions: 699
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 883875528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -