Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_J08
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo...    28   0.69 
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces...    28   0.91 
SPBC646.14c |orc5||origin recognition complex subunit Orc5|Schiz...    26   3.7  
SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces...    26   3.7  
SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces pom...    26   3.7  
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch...    25   4.8  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    25   8.4  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    25   8.4  
SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ...    25   8.4  

>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 571

 Score = 28.3 bits (60), Expect = 0.69
 Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
 Frame = +1

Query: 139 VGEVLGKRLETAGFDKAYVVLGQF------LVLKKEKELFQEWMKDTCSANSKQSADCYQ 300
           VGE L KRLE  G      V G F      L+ K   E F+ W+ +T   N   +AD Y 
Sbjct: 7   VGEYLFKRLEQLGVKSILGVPGDFNLALLDLIEKVGDEKFR-WVGNTNELNGAYAADGYA 65

Query: 301 CLN 309
            +N
Sbjct: 66  RVN 68


>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 27.9 bits (59), Expect = 0.91
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 189 LCGFGPVSGTQERKRIISRMDERYLQCKFQTIGRLLSV 302
           LC   P++ T     + S + E+ LQ  FQ  GR+L++
Sbjct: 289 LCSMDPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNI 326


>SPBC646.14c |orc5||origin recognition complex subunit
           Orc5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 455

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -2

Query: 463 YLYCLKLE-KAITDCGEDYISKVTCYNCNKDFR 368
           +LY L+ E K    C ED I K++C   NKD R
Sbjct: 2   HLYQLEDELKKNVFCREDQIKKLSCLLFNKDCR 34


>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 684

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 217 VPETGPKPHRPYQNQPFLISFL 152
           VP   PK H P++  P LIS L
Sbjct: 576 VPMLSPKYHPPFEQLPLLISSL 597


>SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 336

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +1

Query: 196 VLGQFLVLKKEKELFQEW 249
           V+G+FLVL++ K++ Q W
Sbjct: 256 VVGKFLVLEENKKIVQTW 273


>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -2

Query: 340 TLNIKIHHTIHSSTDSNLPIVWNLH 266
           TL+  +HH IH+ T SNL ++ N++
Sbjct: 37  TLDNLVHH-IHNGTTSNLRLISNIN 60


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -2

Query: 190 RPYQNQPFLISFLKLHQHQPNPLQVY 113
           RPY   P L  FLKL   Q NP  +Y
Sbjct: 644 RPYVLSPILNGFLKL---QDNPSSIY 666


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -1

Query: 176 PAVSNLFPKTSPTPAKSVTGLSPIGSATKFRCFCDVLDI 60
           PAVS+ F   +PT   S T  S I      R   + +D+
Sbjct: 484 PAVSSTFSFNAPTTTPSATSFSIINKEKPARSPNETIDV 522


>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 301

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +3

Query: 21 LRERDLTLKSYVKNVEYITKTSK 89
          L+E +  LKS +KN+E ITKT K
Sbjct: 34 LKEIEQRLKS-IKNIEKITKTIK 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,879,740
Number of Sequences: 5004
Number of extensions: 36364
Number of successful extensions: 118
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)