Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_J08
         (500 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0552 + 22040547-22040579,22040655-22040855,22040939-220411...    33   0.13 
01_03_0059 + 12109301-12109330,12109465-12109587,12109663-12110112     28   3.7  
02_05_1264 + 35321972-35322448,35323022-35323252,35323903-353245...    27   8.5  

>06_03_0552 +
           22040547-22040579,22040655-22040855,22040939-22041115,
           22041791-22041984,22042277-22042539,22042964-22043073
          Length = 325

 Score = 33.1 bits (72), Expect = 0.13
 Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
 Frame = +1

Query: 106 MGDKPVTDLAGVGEVLGKRLETAGFDKAYV--VLGQFLVLKKEKELFQEWMKDTCSANSK 279
           MGDK       VG++L   L+    DK     +  +  VLKKE  +F E+     S    
Sbjct: 1   MGDKAEWGDGFVGKILFPSLQKKSGDKRTKKQLKNKLDVLKKEYSMFMEFKNCATSLGWD 60

Query: 280 QSADCYQCLNEWCDEFL 330
           ++     C  EW DE L
Sbjct: 61  EAKQTIVCSAEWWDEHL 77


>01_03_0059 + 12109301-12109330,12109465-12109587,12109663-12110112
          Length = 200

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = +3

Query: 117 TCNGFGWCW*SFRKEIRNGWF**GLCGFGPVSGTQERKRIISRMDERYLQCKF 275
           TC G  W W   R+ +   W    LC  G  S  + R+ + S   + +  C F
Sbjct: 62  TCAGTNW-WPRRRRILHGKWLKHILCSAGGRSKAERRRHVCSTSPDAHRGCYF 113


>02_05_1264 +
           35321972-35322448,35323022-35323252,35323903-35324565,
           35324698-35324806,35324965-35325383
          Length = 632

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -1

Query: 176 PAVSNLFPKTSPTPAKSVTGLSPIGSATKFRCFCDVLDIFNVTF 45
           PA+++ FP   P+  KSV  LS +  ++  R    ++ +  +TF
Sbjct: 520 PAMASEFP---PSTGKSVVPLSAVNPSSSIRVTAGIIQLGGITF 560


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,075,756
Number of Sequences: 37544
Number of extensions: 203848
Number of successful extensions: 578
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)